Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03180 ATGGAGAATACGGGAGGCGTGAGAAAAGGTGCATGGATATATGAGGAAGACAAACTACTCAAAGCTTGCATTAACAAATATGGTGAAGGAAAGTGGCATTTAGTTCCTCAAAGAGCAGGATTGAATAGGTGCCGGAAAATTTGTAGATTGAGGTGGTTAAATTATTTAAGTCCCAACATTAAAAGAGAAAGCTTTGCAGAAGATGAAATTGATATGATCCTAAGGTTACACAAACTCCTAGGGAATAGATGGTCATTGATTGCTGCAAGGCTTCCTGGTAGAACATCTAATGATGTGAAGAATTATTGGCATACACACTTGCTGAAAAAGGTAGtttcaaagaaagaagaaaagaaagaaaaagaaaaacctaAGGAAACCATGAAAGTGCATGAAGTTATTAAACCTAAAGCTATAACTCTTTCAACTAATTTTGGGAAACAACCAGTACTGGCTTCAAATAAAGATAGAAATGTCCCTAAAGATTGTGATGACACAGAGACAGCTAGGGTTCCAAATCAAATTGCTAATTCACAACCAAGTTTTGGTAATGTCCCAATGCCTTGTGAATTGTGGTCTGATAGTTTATGGAACATGGAAGAGGAAGCAGGCAGTGAGAATATTGGCTCATGCTCTTCATTACATGAGGAGAATTTCAATATGGAGTTTCCAAATTTTGATGACTCCTTTTGGGATTCTAGCCTTTTTTATTTCGATTCTCTTTGGGATATATAG 735 0.3537 MENTGGVRKGAWIYEEDKLLKACINKYGEGKWHLVPQRAGLNRCRKICRLRWLNYLSPNIKRESFAEDEIDMILRLHKLLGNRWSLIAARLPGRTSNDVKNYWHTHLLKKVVSKKEEKKEKEKPKETMKVHEVIKPKAITLSTNFGKQPVLASNKDRNVPKDCDDTETARVPNQIANSQPSFGNVPMPCELWSDSLWNMEEEAGSENIGSCSSLHEENFNMEFPNFDDSFWDSSLFYFDSLWDI 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03180 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Tsu05g03180 244 Gene3D - 9 61 - -
Tsu05g03180 244 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Tsu05g03180 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Tsu05g03180 244 Gene3D - 64 137 - -
Tsu05g03180 244 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Tsu05g03180 244 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Tsu05g03180 244 CDD SANT 67 107 IPR001005 -
Tsu05g03180 244 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 167 - -
Tsu05g03180 244 CDD SANT 15 56 IPR001005 -
Tsu05g03180 244 SMART sant 61 109 IPR001005 -
Tsu05g03180 244 SMART sant 8 58 IPR001005 -
Tsu05g03180 244 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Tsu05g03180 244 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Tsu05g03180 244 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03180 Tsu-Chr5 43013006 43013938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03180 2 142 MYB Transcription Factor Family AT1G66370 59.589 2.57e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g03180 Myb_DNA-binding 7.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03180 - K09422 mtr:MTR_5g079120 320.857