Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03175 ATGGAGAATACCGGAGAACTGAGAAGAGGTACATGGACTCCTGAGGAAGATAAACGACTCAAAGCATGCATTGACAAATATGGTGAAGGAAATTGGCATTTAGTTTCTGAGAGAGCGGGATTGAATTGGTGCCGCAAAAGTTGTAGATTGAGGTGGTTAAATTATTTAAACCCCAATATTAATAGAGAAATCTTTTCTAAGGATGAAGTTGATTTGATCAAAAGGTTACACAACCTCCTTGGAAATAATACTGTAGTACTCTAG 264 0.375 MENTGELRRGTWTPEEDKRLKACIDKYGEGNWHLVSERAGLNWCRKSCRLRWLNYLNPNINREIFSKDEVDLIKRLHNLLGNNTVVL 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03175 87 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 83 - -
Tsu05g03175 87 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Tsu05g03175 87 SUPERFAMILY Homeodomain-like 10 83 IPR009057 -
Tsu05g03175 87 Gene3D - 9 61 - -
Tsu05g03175 87 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Tsu05g03175 87 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 60 IPR017930 -
Tsu05g03175 87 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 83 - -
Tsu05g03175 87 SMART sant 8 58 IPR001005 -
Tsu05g03175 87 CDD SANT 11 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03175 Tsu-Chr5 42930320 42930760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03175 2 82 MYB Transcription Factor Family AT1G66370 66.667 4.98e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu05g03175 Myb_DNA-binding 9.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03175 - K09422 mtr:MTR_5g078930 134.806