Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03173 ATGGAGAATACCGGAGGACTGAGAAGAGGTACATGGACTCCCGAGGAAGATAAATTACTCAAAGCATGCATTGACAAATATGGTGAAGGAAATTGGCATTTAGTTTCTGAGAGAGCGGGATTGAATAGGTGCCGCAAAAGTTGTAGATTGAGGTGGTTAAATTATTTAAACCCCAATATTAATAGAGAAAGCTTTTCTAAGGATGAAGTTGATTTGATCAAAAGGTTACACAACCTCCTTGGAAATAAATGGTCATTGATTGCTGGAAGGCTTCCTGGTAGAACATCTAATGATGTGAAGAATTATTGGTACTCATATATGAAGAAGAAGGTGGtttcagaagaagaaaaagaagaagaagaagaagaagaagaagaagaaaagaaagagaagaaatttAAGGAAACTATGACATTTCATGAAGTTATTAAACCTATACCTCTACGTCTTTCATCTAATTTTGGAAAACAACCAGTAATGACTTCAAATCATGACACAGAGACAGCTAGGGTTACAAATCACTTTGCTAAATGTTCTTTAGCTTCACAACCAAATCTAGGTGATATCCCAATATCTTGTGAATTGTGGTCTGAAAATTTATGGAACATGGGGGAAGATGTAAATgcctcatcctcttccttgcaAGAGAACAACTATCAGGAATTTTCAAATGTTGATAATTCCTTTTTGGATTCCAACCTTGACGATTTCTATTCTCTTTGGGATCCATAG 732 0.3197 MENTGGLRRGTWTPEEDKLLKACIDKYGEGNWHLVSERAGLNRCRKSCRLRWLNYLNPNINRESFSKDEVDLIKRLHNLLGNKWSLIAGRLPGRTSNDVKNYWYSYMKKKVVSEEEKEEEEEEEEEEKKEKKFKETMTFHEVIKPIPLRLSSNFGKQPVMTSNHDTETARVTNHFAKCSLASQPNLGDIPISCELWSENLWNMGEDVNASSSSLQENNYQEFSNVDNSFLDSNLDDFYSLWDP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03173 243 Coils Coil 108 137 - -
Tsu05g03173 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Tsu05g03173 243 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 168 - -
Tsu05g03173 243 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Tsu05g03173 243 CDD SANT 64 107 IPR001005 -
Tsu05g03173 243 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Tsu05g03173 243 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Tsu05g03173 243 SMART sant 8 58 IPR001005 -
Tsu05g03173 243 SMART sant 61 109 IPR001005 -
Tsu05g03173 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 60 IPR017930 -
Tsu05g03173 243 CDD SANT 11 56 IPR001005 -
Tsu05g03173 243 Gene3D - 9 61 - -
Tsu05g03173 243 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Tsu05g03173 243 Gene3D - 63 138 - -
Tsu05g03173 243 MobiDBLite consensus disorder prediction 114 133 - -
Tsu05g03173 243 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Tsu05g03173 243 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03173 Tsu-Chr5 42879038 42880294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03173 2 173 MYB Transcription Factor Family AT1G66370 45.833 4.49e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g03173 Myb_DNA-binding 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03173 - K09422 mtr:MTR_7g017260 268.085