Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03171 ATGGAGAATAACAGAGGCGTCAAAAAAGGTACCTGGACGCATGAGGAAGATATGCTACTCAAGTCTTGCATCGAGAAGTATGGAGAAGGCAAATGGCATTTAGTTCCTCAAAGAGCAGGACTGAATAGGTGCAGAAAAAGTTGTAGGTTGAGGTGGTTAAATTATTTAAGCCCCAGCATCAACAGAGAACGTTTTGCTGAGGATGAAGTAGATTTGATCAAAAGGTTACACGGTCTCTTAGGGAATAGATGGTCGTTGATTGCTGCAAGGCTTCCTGGTAGAACCGCTAATGATGTGAAGAATTATTGGCACACCCACTTGCtaaagaag 330 0.4212 MENNRGVKKGTWTHEEDMLLKSCIEKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLSPSINRERFAEDEVDLIKRLHGLLGNRWSLIAARLPGRTANDVKNYWHTHLLKK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03171 110 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 110 - -
Tsu05g03171 110 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 5 110 - -
Tsu05g03171 110 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Tsu05g03171 110 Gene3D - 2 62 - -
Tsu05g03171 110 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Tsu05g03171 110 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Tsu05g03171 110 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Tsu05g03171 110 CDD SANT 67 107 IPR001005 -
Tsu05g03171 110 SMART sant 61 109 IPR001005 -
Tsu05g03171 110 SMART sant 8 58 IPR001005 -
Tsu05g03171 110 CDD SANT 11 56 IPR001005 -
Tsu05g03171 110 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Tsu05g03171 110 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 110 IPR017930 -
Tsu05g03171 110 Gene3D - 64 110 - -
Tsu05g03171 110 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03171 Tsu-Chr5 42807020 42821569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03171 2 110 MYB Transcription Factor Family AT1G66370 76.147 6.46e-58 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g03171 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03171 - K09422 mtr:MTR_5g078860 199.904