Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03161 ATGGAGAAGAGTAAGACAAGATCAGGTGTTAGGAAAGGTGCATGGACATATGAAGAAGACAAGTTACTCATATCTTGCATTAGAAAGTATGGTGAAGGAAAATGGCATTTAGTTTCTCAAAGAGCAGGATTGAATAGGTGTCGAAAAAGTTGTAGGTTAAGGTGGTTAAATTATTTAAACCCCACTATCAACAATGAAAGTTTatctgaagatgaagttgatATGATGTTAAGGTTACACAAACTCTTAGGAAACAGATGGTCGTTGATTGCTGGAAGGCTCCCTGGTAGAACAGCTAATGATGTGAAGAACTACTGGCATGGACACTTGCTTAAGaatattgtttcaaaaaaagaagagggaAAAAATGAGAAACAAAAGGAAACCATGAAAGCTCATGAAGTTATTAAACCTCAACCTCGAACTTTTTCAACTAATTCACCTTGGTTGAAAGGGAAACAAATATTGGCATCAAATAAAGATGATAAAATTCCTACATATCATGATGATCAATTGGAGACTATGGTTCCAAATCATATTGGTATAGATTATGCATCTTCATCAAAACCAAGTCCAGGTAATACCACACCGATACCGTGT 600 0.335 MEKSKTRSGVRKGAWTYEEDKLLISCIRKYGEGKWHLVSQRAGLNRCRKSCRLRWLNYLNPTINNESLSEDEVDMMLRLHKLLGNRWSLIAGRLPGRTANDVKNYWHGHLLKNIVSKKEEGKNEKQKETMKAHEVIKPQPRTFSTNSPWLKGKQILASNKDDKIPTYHDDQLETMVPNHIGIDYASSSKPSPGNTTPIPC 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03161 200 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Tsu05g03161 200 CDD SANT 69 110 IPR001005 -
Tsu05g03161 200 Gene3D - 4 65 - -
Tsu05g03161 200 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Tsu05g03161 200 Gene3D - 67 138 - -
Tsu05g03161 200 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 9 159 - -
Tsu05g03161 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 114 IPR017930 -
Tsu05g03161 200 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Tsu05g03161 200 Pfam Myb-like DNA-binding domain 69 109 IPR001005 -
Tsu05g03161 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Tsu05g03161 200 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 9 159 - -
Tsu05g03161 200 CDD SANT 14 59 IPR001005 -
Tsu05g03161 200 SMART sant 64 112 IPR001005 -
Tsu05g03161 200 SMART sant 11 61 IPR001005 -
Tsu05g03161 200 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03161 Tsu-Chr5 42689188 42730137 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03161 9 144 MYB Transcription Factor Family AT1G66370 64.789 8.96e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g03161 Myb_DNA-binding 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03161 - K16166 mtr:MTR_7g017260 266.544