Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03155 ATGAGTATGGAGAATACCAGCGTCGTGAGAAAAGGTGCGTGGACATATGAGGAAGATAAGCTACTCAAGAATTGCATTAGCAAGTATGATGAAGGAAAGTGGCATTTAGTTCCTCAAAGAGCAGGATTGAATAGATGTAGAAAAAGTTGTAGACTTAGGTGGTTGAATTATTTAAGCCCCAACATCAAAAGAGGAAGCTTTGCTGAAGACGAAATTGATATGATCATAAGGCTACACAATCTCCTAGGGAACAGATGGTCGTTGATTGCTGGAAGGCTCCCTGGTAGAACAGCTAATGATGTGAAGAACTACTGGCATGGACACTTGCTTAAGaatattgtttcaaaaaaagaagagggaAAAAATGAGAAACAAAAGGAAACCATGAAAGCTCATGAAGTTATTAAACCTCAACCTCGAACTTTTTCAACTAATTCACCTTGGTTGAAAGGGAAACAAATATTGGCATCAAATAAAGATGATATAATTCCTACATATCATGATGATCAATTGGAGACTATGGTTCCAAATCATATTGGTATTGATTATGCATCTTCATCAAAACCAAGTCCAGGTAATACTACACCGATACCGTGTGCAATGTTGATGGACAGTTTATGGAACTTGGAGGAGCCTGTAGGTAGTAGTGAAATAATTGGCTCAAGCTCTTCATTTCAAGAGGAGAATTACAATATGGAGTTTCCAAATGTTGATGATTCCTTTTGGGATTCTGATCTTTGTGATTTCGATTCTCTTTGGAATCTTTAG 768 0.3646 MSMENTSVVRKGAWTYEEDKLLKNCISKYDEGKWHLVPQRAGLNRCRKSCRLRWLNYLSPNIKRGSFAEDEIDMIIRLHNLLGNRWSLIAGRLPGRTANDVKNYWHGHLLKNIVSKKEEGKNEKQKETMKAHEVIKPQPRTFSTNSPWLKGKQILASNKDDIIPTYHDDQLETMVPNHIGIDYASSSKPSPGNTTPIPCAMLMDSLWNLEEPVGSSEIIGSSSSFQEENYNMEFPNVDDSFWDSDLCDFDSLWNL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03155 255 Gene3D - 65 137 - -
Tsu05g03155 255 SUPERFAMILY Homeodomain-like 10 105 IPR009057 -
Tsu05g03155 255 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 153 - -
Tsu05g03155 255 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Tsu05g03155 255 Pfam Myb-like DNA-binding domain 64 108 IPR001005 -
Tsu05g03155 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Tsu05g03155 255 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Tsu05g03155 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Tsu05g03155 255 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Tsu05g03155 255 SMART sant 10 60 IPR001005 -
Tsu05g03155 255 SMART sant 63 111 IPR001005 -
Tsu05g03155 255 Gene3D - 11 63 - -
Tsu05g03155 255 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 8 153 - -
Tsu05g03155 255 CDD SANT 69 109 IPR001005 -
Tsu05g03155 255 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03155 Tsu-Chr5 42494463 42516502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03155 4 182 MYB Transcription Factor Family AT1G66370 52.973 7.34e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g03155 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03155 - K09422 mtr:MTR_7g017260 327.405