Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03154 ATGGAGAATACCAGAGGCGTGAGAAAAGGTGCGTGGACATATGAGGAAGATAAGCTACTCAAGAATTGCATTAACAATTATGGTGAAGGAAAGTGGCATTTAGTTCCTCAAAGAGCAGGATTGAATAGGTGCCGAAAAAGTTGTAGATTGAGGTGGTTAAATTATTTAAACCCTACAATTAATAGAGAAAGTTTTTCTGAGGATGAAGTTGATATGATTTTAAGGTTACACAAACTCCTCGGAAACAGATGGTCACTAATTGCTGCAAGACTTCCGGGTAGAACAGCTAATGATGTGAAGAACTATTGGCACACACACTTGCGCAAGAAGGTAGTACCaagaaaaatagaagaaaaaaagaaacctTTAGAAATTACCATGAAAACTCACGAAGTTATTAAACCTCAGCCTCGAACTTTTTCATCTCATTCACTTAGGTTAAATGAGAAACATAACAATTATGTGAAACCAATTGTGACGGTGTCGACAAAAGATGTAACTGTAGCTAAAGATGGTGACAAAGAGTGTACTATGCTACCAATTGATGGTGATGGAGATAGTGCTGCACAACCATATGCTGAAAATTCCACAATGTCTACCAAGTGGTGGGAGAGTTTGTTAAATGAGAGCAGTGACAAGATTGGTTCATGCACTTTGTTACAAGAGAAGGAATATTCCAATTTAGAGTTTGCAAATGTTGAGAAATTTTTGAATCAAGACTCCGATATTAATCTTTTCGTGTTCTGTTTGTTTTTCGTCGGGTTGGATCGACTTCCTTGTTGGTTTGTTATGGCTCGTGCTCTGGCGGAGGTGGTGGTTTTGTACCTCATTGCTTATCACTCACTTGCCTTTGTCACAATCGGTGGCAAATCTGGCTGTGTTTTGGTGTTTGGATCCGGTAGTTTGAAGTAG 912 0.3816 MENTRGVRKGAWTYEEDKLLKNCINNYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPTINRESFSEDEVDMILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLRKKVVPRKIEEKKKPLEITMKTHEVIKPQPRTFSSHSLRLNEKHNNYVKPIVTVSTKDVTVAKDGDKECTMLPIDGDGDSAAQPYAENSTMSTKWWESLLNESSDKIGSCTLLQEKEYSNLEFANVEKFLNQDSDINLFVFCLFFVGLDRLPCWFVMARALAEVVVLYLIAYHSLAFVTIGGKSGCVLVFGSGSLK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03154 303 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 161 - -
Tsu05g03154 303 Gene3D - 63 134 - -
Tsu05g03154 303 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 5 161 - -
Tsu05g03154 303 SMART sant 8 58 IPR001005 -
Tsu05g03154 303 SMART sant 61 109 IPR001005 -
Tsu05g03154 303 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Tsu05g03154 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Tsu05g03154 303 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Tsu05g03154 303 CDD SANT 64 107 IPR001005 -
Tsu05g03154 303 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Tsu05g03154 303 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Tsu05g03154 303 CDD SANT 11 56 IPR001005 -
Tsu05g03154 303 Gene3D - 9 61 - -
Tsu05g03154 303 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Tsu05g03154 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03154 Tsu-Chr5 42400828 42461305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03154 2 207 MYB Transcription Factor Family AT1G66370 49.345 4.36e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g03154 Myb_DNA-binding 6.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03154 - K16166 mtr:MTR_5g078860 298.901