Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03145 ATGGAGATTCTGGGTCAAAAAGAAGAAATGCATTCTGTTGTACATGTACACAAACTACTTGATCAATTTTCATGTGGAAATGACTATGCTTTGAAGGTAAGGAAACCATATACTATCACAAAGCAAAGAGAAAAATGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTATACGGCCGAGCTTGGCGAAAAATCGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATCAATCGAGACACTAATGGAAACGATACAACGATGGTGGAGACAATTGAAATTCCGCCTCCACGACCAAAGCGAAAGCCGATTCATCCTTATCCACGTAAACTAGTTGAGATCCCAAAGAATGAAATCAGCAACTTGGAACAGCCACTGAGGTCTAATTCTCTTGTGTCGTTAGATTTTGGTCAAGAAAACAACTCGCCCAAGTCGGTACTATCTGCTGTTGCTTCGGAAACCCTCGGTTTTTCTGATTCGGATACTCCAACTGGAAGTTTGTCCCCTGTCTCATCCGTTAGTGCTGTCCATACTCATAGCTTTCCGCTTCTTGAgtccaaatcatcatcaaccgAGGAAGATTTGTCTCAACAAATAGATGAACTGAATGCCGATTCAGCTCATGATGAACAACCTTTAATGAAACTGGAGCTTTTCTCTAATGAGAGTGTCTTTACCAAAGACGAAGAAGCAACAGAAGAATCGCCTTGTCGTACACTCAAACTTTTCGGAACAACTCTACTAGTAAACAATACTTGCAAACCATCTTCTGCATCAACGGACGCATCAAAACCGGTACCTCCCATGCATCATACGCAACAACTTCAGCGTAGATGTTCAGACATTGGTCTTGCAACTGTCGTTCCTTGGTGGACTCTCTCTGACAATTCAGCCTTTAAACCACCGCACAAGGAACACGAGGAAGGATCTTGTGTTGGTTCTAACACTAGTTCAATAAATGACGGAGAAAGCAACGAAAGAGAAAGCCAATGTTCACCAGTGAGACATAAAACATTTGGGAAAGGATTTGTACCATATAAAAGATGCATATCAGAAAGAGAAAGCCATTGTTCAACAATAACAGATGAGAGGAGAGAACATCAACGTATCAGGCTTTCTTTATAG 1167 0.4036 MEILGQKEEMHSVVHVHKLLDQFSCGNDYALKVRKPYTITKQREKWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTAVQIRSHAQKFFSKINRDTNGNDTTMVETIEIPPPRPKRKPIHPYPRKLVEIPKNEISNLEQPLRSNSLVSLDFGQENNSPKSVLSAVASETLGFSDSDTPTGSLSPVSSVSAVHTHSFPLLESKSSSTEEDLSQQIDELNADSAHDEQPLMKLELFSNESVFTKDEEATEESPCRTLKLFGTTLLVNNTCKPSSASTDASKPVPPMHHTQQLQRRCSDIGLATVVPWWTLSDNSAFKPPHKEHEEGSCVGSNTSSINDGESNERESQCSPVRHKTFGKGFVPYKRCISERESHCSTITDERREHQRIRLSL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03145 388 ProSiteProfiles SANT domain profile. 41 92 IPR017884 -
Tsu05g03145 388 CDD SANT 45 88 IPR001005 -
Tsu05g03145 388 MobiDBLite consensus disorder prediction 325 341 - -
Tsu05g03145 388 MobiDBLite consensus disorder prediction 315 347 - -
Tsu05g03145 388 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 90 IPR006447 GO:0003677
Tsu05g03145 388 SMART sant 42 90 IPR001005 -
Tsu05g03145 388 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
Tsu05g03145 388 Pfam Myb-like DNA-binding domain 43 86 IPR001005 -
Tsu05g03145 388 PANTHER SWI/SNF COMPLEX-RELATED 19 279 - -
Tsu05g03145 388 PANTHER SWI/SNF COMPLEX-RELATED 298 375 - -
Tsu05g03145 388 Gene3D - 45 92 - -
Tsu05g03145 388 PANTHER PROTEIN REVEILLE 7-RELATED 298 375 - -
Tsu05g03145 388 ProSiteProfiles Myb-like domain profile. 38 88 IPR001005 -
Tsu05g03145 388 PANTHER PROTEIN REVEILLE 7-RELATED 19 279 - -
Tsu05g03145 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03145 Tsu-Chr5 42289162 42292086 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu05g03145 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03145 - - gmx:778060 456.447