Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03142 ATGAGTCGCAAGAATAGCTCCGTTTCTGTGCTTATTTCCGACCCACAAGTGTTCGATTGCTACAATTGTTCTCAAACGTTAACTATTCCAGTTTTTCAGtGTGATAATGGTCATATTGTTTGCTCTACCTGCTGTCTGAAACTTATGAACAAGTGTCGCAAGTGCTCATTGCGCATTAGCTCAAAACGTTGTAAAGCCATTGAGAATATATTGCAATCAATGGAAAGGCCATGTCCCAATGAAATACATGGTTGCAAGGAGAGTATAAGTTACCTTGGAAATAGGAAGCATGAGGAATGCATCCATGTTCCATGTTGCTGCCCCCTTTTAGGTTGTGACTTTGTTGGATCTTCGGAAGTGTTGTCCGACCATTTCAGCGATAAACACGATGGTTCTCAGATTGATTTTTCTTATGGTTACTCCTCCGTTGTCTCTTTGAAGCGTAATGATGAAACCATTGTACTTCAAGAGGAAACTGATGGCAAACTATTTATTCTCAATAATAGTACTATGCTTTTGGGAAATGCAGTCAATATTTGCTACATTGGTCCTAACTCTTCTGAATCTGAGTATAGTTATGATATATTGGCTTCGTCTCCGACATGCAAACTGATATTACATTCTTTTGTGAAGAACGTTCAACGTGTTACATTAGCAACTCTTTCATCAAATTTCCTTGTCATTCCATCTGGTTCTTTTGAACCTCTCAAGCTAGAAATTTGCATAACCCCCTTGATGCAAATCTTCGTAAAGACCCTGACTGGAACGATAATCCACGTGAGGGTTAAGAGTTCAGACACAATAGTAGATCTgaagaagaagatttttgaCAAGGGGGGCTACGGAGTGCACGATCAACGTCTGATCTTTGGTGGTTACCAACTAGAAGACACACGGACCGTTGCCAATTACAACATCCAAGATAAGACAACCATCGACCTTGTGCTCCGCCTCACTGGGGACTAG 966 0.4027 MSRKNSSVSVLISDPQVFDCYNCSQTLTIPVFQCDNGHIVCSTCCLKLMNKCRKCSLRISSKRCKAIENILQSMERPCPNEIHGCKESISYLGNRKHEECIHVPCCCPLLGCDFVGSSEVLSDHFSDKHDGSQIDFSYGYSSVVSLKRNDETIVLQEETDGKLFILNNSTMLLGNAVNICYIGPNSSESEYSYDILASSPTCKLILHSFVKNVQRVTLATLSSNFLVIPSGSFEPLKLEICITPLMQIFVKTLTGTIIHVRVKSSDTIVDLKKKIFDKGGYGVHDQRLIFGGYQLEDTRTVANYNIQDKTTIDLVLRLTGD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03142 321 SMART ubq_7 246 317 IPR000626 GO:0005515
Tsu05g03142 321 ProSiteProfiles Zinc finger SIAH-type profile. 73 130 IPR013010 GO:0008270
Tsu05g03142 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 125 IPR013083 -
Tsu05g03142 321 ProSiteProfiles Ubiquitin domain profile. 246 321 IPR000626 GO:0005515
Tsu05g03142 321 Gene3D - 243 321 - -
Tsu05g03142 321 SUPERFAMILY TRAF domain-like 77 243 - -
Tsu05g03142 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 2 249 - -
Tsu05g03142 321 SUPERFAMILY Ubiquitin-like 234 320 IPR029071 -
Tsu05g03142 321 Pfam Ubiquitin family 248 318 IPR000626 GO:0005515
Tsu05g03142 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 2 249 IPR044286 -
Tsu05g03142 321 PRINTS Ubiquitin signature 298 319 IPR019956 -
Tsu05g03142 321 PRINTS Ubiquitin signature 256 276 IPR019956 -
Tsu05g03142 321 PRINTS Ubiquitin signature 277 297 IPR019956 -
Tsu05g03142 321 Pfam Seven in absentia protein family 63 227 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03142 Tsu-Chr5 42238109 42240938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03142 246 320 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 62.667 8.95e-23 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03142 K04506 - gmx:100797881 227.254