Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03123 ATGAAACAAAACATTGATCTTGAAGTAGAAGCTTACGCCGAATACGAATCTGATGTTACAAGCCAAGTTGCTTCTAATGTATCAACTCAAGAAACCACTTCCAACATATCAAATCCAATAGGGATTAATCTCAATCATCCTAATTTAGATGATAATGATATATCTCTTGACTTAACTCTCAACTTCAAGAACAATGAGTTAAGGGATTCAAATTCAATAGGATTCTCAATCTCAAGCACTTCTGAGAGTAGCAATGAACCTGCATCAGCAACAATTCAAAGAGTTTTCTCATGCAATTACTGTCAGAGAAAGTTTTTCAGCTCTCAAGCTCTTGGTGGACACCAAAATGCAcacaaaagagaaagaacatTAGCAAAAAGAGCTATGAGAATGGGAATTTTTTCTGATAGGTATAATGCTAGTTTAGCATCATTACCTTTACATGGTTCTTTTAGATCATTAGGGATTAAAGCACACTCTTCAATGCACTATGGTTTCTCGGTACCAACAACAATTCGGCCTCATAATCATCATGAGAcgaaaaacaatacaaaattcGAACAAGGGTGTGTTGGTTTTCCGATATTCTTGGAAGACGAGGAGTCGGAGTTGTTGTGGCCAGGTAGTTTTCGACCAGTGTCTGAAGCAGGTAATGGACAACAGAATTTTATACTCACTGAGATGAATCCATGTGTAGAGAAAGAAAAATCTACACCTGATTTGACATTGAAACTTTGA 738 0.3509 MKQNIDLEVEAYAEYESDVTSQVASNVSTQETTSNISNPIGINLNHPNLDDNDISLDLTLNFKNNELRDSNSIGFSISSTSESSNEPASATIQRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGIFSDRYNASLASLPLHGSFRSLGIKAHSSMHYGFSVPTTIRPHNHHETKNNTKFEQGCVGFPIFLEDEESELLWPGSFRPVSEAGNGQQNFILTEMNPCVEKEKSTPDLTLKL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03123 245 PANTHER ZINC FINGER PROTEIN JAGGED 1 245 IPR045320 GO:0003700
Tsu05g03123 245 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Tsu05g03123 245 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 245 - -
Tsu05g03123 245 SUPERFAMILY beta-beta-alpha zinc fingers 93 123 IPR036236 -
Tsu05g03123 245 Gene3D Classic Zinc Finger 75 141 - -
Tsu05g03123 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03123 Tsu-Chr5 42040539 42041276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03123 78 245 C2H2 Transcription Factor Family AT1G66140 47.980 1.19e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu05g03123 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03123 - - gmx:100788768 312.383