Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03122 ATGAAGAAAAACACCAACATCATGCTCATAAACCCTTTAGCTTTTTTGTTATTCTTCTCCTTCTTTACCTTCTTTACTTACTCTCAAAACGACGACGCTTCAGTTATGCAAACACTCAAAACAAATCTCAACCCACCCATTTCACTTGGTTGGTCCGACCCGGATCCATGTAAATGGAATCACGTTATTTGCTCAGATGATAAACGGGTTACCCGAATCCAAATCGGTCGTCAGAATCTTCAAGGTACACTCCCTCAAACCCTTCAAAACCTAACTCAGTTAGAACATTTGGAGCTTCAATTCAACAATTTCTCTGGTCCTATTCCGAGTTTACACGGTTTAACTTCTCTTCAAGTTTTCATGGCGAGTGGTAACAGTTTTTCATCAATTCCAGAAGATTTTTTCGCCAATAAGACTCAGCTTGTTGCTGTAGAGATCGATAATAACCCTTTTGAGCCATGGGAGATTCCTATGTCTCTAAAAGATGCTTTGTTATTACAGAATTTTTCGGCCAATAATGCTAATGTTAAGGGTAAGTTACCGGATTTTTTTAGTGATGAAGTGTTTTCTAGTTTGACCCTTTTGCATTTAGCTTTCAATAATCTTGAGGGTGTGTTGCCAAAGAGCTTTTCTGGGTTAAATGTTCAATCTTTGTGGTTGAATGGTCAGAAGAGTGATGATAAGCTTAGTGGGTCAGTTGATGTTTTACAGAATATGACTTCTTTGACTGAAATTTGGTTGCATAGTAATAAGTTTACTGGTCCTTTGCCTAGTTTCGAAGGGTTGGAAAGTTTAAAGGTTTTGAGTTTAAGGGATAACTCTTTCACTGGCGTTGTTCCGAGTTCATTGGTTAGCCTTAAATCACTTAAAGTTGTGAACTTGACTAATAACTTGTTTCAGGGTCCAATGCCGGTTTTTGGTGCTGGTGTTGAGGTTGATAATATTAAGGATTCTAATAGCTTTTGTTTGCCTAGTCCTGGTGATTGTGATCCTAGGGTGCAGGTTCTTCTTTCTGTTGTTGGGGGTATGGGTTATCCTTGGAGGTTTGCTAATGGTTGGAAGGGGAATGATCCTTGTGCTGATTGGATTGGGATTACTTGTAGTGATGGGAACATTAGTATTGTTAattttcaaaagatgggtcttAGTGGTATCATATCTCCTGAGTTTGCAAAGCTTAAATCGCTGCAAAGACTTCTTCTTTCTGATAACAATCTCACTGGTTCGATTCCTAATGAGCTTACTACTTTGCCTAAGCTAACTTATTTGAATGTTGCTAACAATCATCTCTTTGGAAAAGTACCGAGTTTTAGGAGCAATGTGATTGTGAGTACTAGTGGGAACATTGATATAGGGAAGGATAAAAGCAGCTCTCCCCCTCAGGGTTCGGTGTCTTCTAATGGTACCGATGCGAGTGGTGGAAATGGTGGGAGTAATGTAAATGATGGCAAAAAGTCTTCTCATGTAGCTTTGATCGTGTTTGCTGTCGTTGGGACTGTTTTTGTTGCATCTTTGATTGGTTTCTTGGTTTTCTGCTTGATTAGGATGAAGCAAAAGAAGTTAAGTAGGGTCCAAAGTCCGAATGCACTAGTTATTCACCCTCGGCATTCTGGATCAGATAACGAAAGTGTGAAGATAACGGTTGCTGGTTCGAGTGTCAGTGTTGGAGGTGTGAGTGAAGCCCATGCCGTACCCAATAGTGAGATGGGAGATATTCAAATGGTTGAAGCGGGAAACATGGTAATTTCTATACAAGTTCTGAGGAGTGTCACAAACAATTTCAGTgagaaaaatatattaggaCAAGGAGGTTTTGGAACAGTTTATAAAGGTGAACTCCATGATGGTACAAGAATTGCAGTGAAAAGAATGGAGTGTGGGGCAATAGTTGGGAAGGGTGAAGCCGAATTTAAGTCTGAAATTGCGGTTTTGACAAAGGTTCGTCACAGACATCTTGTTACTCTTCTTGGTTACTGCTTGGATGGGAATGAAAAGCTTCTTGTGTATGAGTACATGCCTCAGGGAACCTTAAGTAGGCATATTTTTAATTGGGCAGAAGAAGGACTCGAACCACTTGCATGGAATAGAAGATTGATCATTGCTTTAGATGTGGCAAGGGGTGTCGAGTACCTTCATAGCCTGGCTCATAAAAGCTTCATACACAGAGACTTGAAACCTTCTAACATTCTTCTTGGGGATGATATGAGGGCAAAGGTTGCCGATTTTGGTCTTGTGCGTCTCGCTCCAGAAGGGAAAGcctcaattgaaacaagaattGCAGGAACTTTTGGATATTTAGCTCCAGAATATGCAGTTACCGGCCGTGTGACAACTAAAGTTGATGTGTTCAGCTTTGGCGTAATATTGATGGAGCTGATAACTGGAAGAAAAGCACTTGATGATAGCCAACCTGAGGATAGCATGCACCTTGTAGCTTGGTTCCGCAGAATGTACATAGATAAGGACTCGTTCCGCAAAGCAATTGACCCGACAATCGACATCAATGAAGAAACACTTGCTAATATACACACTGTAGCAGAGTTAGCAAGTCACTGCAGTGCAAGGGAGCCATATCAAAGGCCTGACATGGGTCATGCGGTTAACGTGCTTTCTTCTCTCGTAGAACAATGGAAACCGTCGGATACAAACTCCGAAGATATCTACGGAATTGACCTTGACTTATCTTTACCACAAGCCCTCAAGAAGTGGCAGGCTTATGAAGGTGCAAGTCAATTGGagtcatcatcttcttcacttCTTCCGAGTTTGGATAACACACAAACAAGTATACCTAATCGCCCATATGGATTTGCCGATTCTTTCACGTCCGCAGATGGTAGGTGA 2844 0.4019 MKKNTNIMLINPLAFLLFFSFFTFFTYSQNDDASVMQTLKTNLNPPISLGWSDPDPCKWNHVICSDDKRVTRIQIGRQNLQGTLPQTLQNLTQLEHLELQFNNFSGPIPSLHGLTSLQVFMASGNSFSSIPEDFFANKTQLVAVEIDNNPFEPWEIPMSLKDALLLQNFSANNANVKGKLPDFFSDEVFSSLTLLHLAFNNLEGVLPKSFSGLNVQSLWLNGQKSDDKLSGSVDVLQNMTSLTEIWLHSNKFTGPLPSFEGLESLKVLSLRDNSFTGVVPSSLVSLKSLKVVNLTNNLFQGPMPVFGAGVEVDNIKDSNSFCLPSPGDCDPRVQVLLSVVGGMGYPWRFANGWKGNDPCADWIGITCSDGNISIVNFQKMGLSGIISPEFAKLKSLQRLLLSDNNLTGSIPNELTTLPKLTYLNVANNHLFGKVPSFRSNVIVSTSGNIDIGKDKSSSPPQGSVSSNGTDASGGNGGSNVNDGKKSSHVALIVFAVVGTVFVASLIGFLVFCLIRMKQKKLSRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGGVSEAHAVPNSEMGDIQMVEAGNMVISIQVLRSVTNNFSEKNILGQGGFGTVYKGELHDGTRIAVKRMECGAIVGKGEAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHIFNWAEEGLEPLAWNRRLIIALDVARGVEYLHSLAHKSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDDSQPEDSMHLVAWFRRMYIDKDSFRKAIDPTIDINEETLANIHTVAELASHCSAREPYQRPDMGHAVNVLSSLVEQWKPSDTNSEDIYGIDLDLSLPQALKKWQAYEGASQLESSSSSLLPSLDNTQTSIPNRPYGFADSFTSADGR 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03122 947 MobiDBLite consensus disorder prediction 913 947 - -
Tsu05g03122 947 SUPERFAMILY L domain-like 333 439 - -
Tsu05g03122 947 PANTHER RECEPTOR PROTEIN KINASE TMK1 21 947 - -
Tsu05g03122 947 CDD STKc_IRAK 600 873 - -
Tsu05g03122 947 Pfam Protein kinase domain 595 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03122 947 SMART LRR_typ_2 189 212 IPR003591 -
Tsu05g03122 947 SMART LRR_typ_2 239 261 IPR003591 -
Tsu05g03122 947 SMART LRR_typ_2 393 417 IPR003591 -
Tsu05g03122 947 SMART LRR_typ_2 114 137 IPR003591 -
Tsu05g03122 947 SMART LRR_typ_2 262 285 IPR003591 -
Tsu05g03122 947 Pfam Leucine rich repeat 390 430 IPR001611 GO:0005515
Tsu05g03122 947 Pfam Leucine rich repeat 241 298 IPR001611 GO:0005515
Tsu05g03122 947 Gene3D Phosphorylase Kinase; domain 1 555 671 - -
Tsu05g03122 947 Gene3D Ribonuclease Inhibitor 331 455 IPR032675 -
Tsu05g03122 947 SUPERFAMILY Protein kinase-like (PK-like) 569 878 IPR011009 -
Tsu05g03122 947 Gene3D Transferase(Phosphotransferase) domain 1 672 892 - -
Tsu05g03122 947 ProSitePatterns Protein kinases ATP-binding region signature. 600 632 IPR017441 GO:0005524
Tsu05g03122 947 Gene3D Ribonuclease Inhibitor 29 329 IPR032675 -
Tsu05g03122 947 MobiDBLite consensus disorder prediction 913 936 - -
Tsu05g03122 947 ProSiteProfiles Protein kinase domain profile. 594 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03122 947 MobiDBLite consensus disorder prediction 451 480 - -
Tsu05g03122 947 PANTHER OSJNBA0070M12.3 PROTEIN 21 947 - -
Tsu05g03122 947 SUPERFAMILY L domain-like 36 307 - -
Tsu05g03122 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672|GO:0006468
Tsu05g03122 947 Pfam Leucine rich repeat N-terminal domain 333 368 IPR013210 -
Tsu05g03122 947 Pfam Leucine rich repeat N-terminal domain 30 65 IPR013210 -
Tsu05g03122 947 SMART serkin_6 594 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03122 Tsu-Chr5 42006117 42009825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03122 73 863 Receptor kinase-like Gene Family AT1G55610 29.446 7.11e-83 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Tsu05g03122 Pkinase 2.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03122 - K00924 aprc:113846741 1478.77