Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03121 ATGGTTTTGTCATGGACAAAAGGAAGTAGAGTTTTTCGTCGtgcaagaaaaggaaaagagtTACTATCAAATTCATTGAATGATTTACAAGTTGAGATAGCAATCCCAACTCATTTTCGTTGTCCGGTAACACTAGATTTAATGAAAGATCCGGTTACACTTTCAACCGGCATAACCTACGATAGAGATAGTATCGAAAAATGGATCGAATCAGGTAACAACACGTGTCCCGTTACAAAAACAGAATTAACTTCCTTTGACATTGTACCAAATCATTCTCTTCGTAGAATGATTCAAGATTGGTGTGTACAACACCGTTCCTATGGCGTCGAAAGAATCCCAACTCCACGTATTCCAGTAACCCCATACGAGGTTACTGACACGTGTAGTAGGATTTTGTCGGCGGCGCAACAAGGGGATGGAAACAAGGTTATTGAATTGGTGAAGAAGATAAAAAGTTGGGGAAAAGAGAGTGAGAGGAACAAGAAATGTATTGTTTCAAATGGTGCTCCTCTTGTTCTTGCTAAGGTTTTTGATTCTTTCTCACGTGGTTCAATAGAGaagaattttgttgttttggaagAGATTTTGGAAGTGCTGACGTGGATGCGTCCTGTTCCTGAAGAGGGTAGATTTGTCTTTTTGGGATCTTCAAATTCTTTGagttgtttggtttggttcttaaatgatcaacaaaaaatttcaactaGGCAAAATGCTTCTTTGTTGCTTAAGGAAATGAATGTTGAATCATTAGTGAAAATTGAAGGGATTGTTGAATCTTTGGTCAACATGGTTAAGGTTAATGTTGAGATTGGAATTGCTTCTACAAAAGCATGTTTGTCAACAATTTTTAACTTGGTTTACTCATCAAAGAGTAGAAAATTAGTTTTAGAGAGATTTGTTGAATTGggtttgatttcaattttattggaGAATATTCTTGTTGATGCTGAAAAAGGAGTATGTGAGAAAGCTTTAGGTGTATTGAATTGTCTTTGTGAAAGTAAAAatggggtgcaaatagcaaagTCAAATGCTTTAACTTTGCCTCTTGTTATTAAGAAGCTTTTGAGGGTTTCTGAATTGAGTTCtagttttgttgtttcaattgtTTACAAGATTTGTGATAAGGCTGAAGAAGGTGTTTTGATTGAAGCAATTCAAGTTGGGATGTTTCAAAAACTACTTGTTTTGTTGCAAGTTGGTTGTGGTGAGAGTACAAAGGAGAAAGCTACTGAATTGTTGAAATTGTTGAATGGTTATAAAAGCAAAGCTGAATGTGTTGATTCATCATCATTGGATTTCATGCATCTTAAGAAGCCATTCTAA 1332 0.3228 MVLSWTKGSRVFRRARKGKELLSNSLNDLQVEIAIPTHFRCPVTLDLMKDPVTLSTGITYDRDSIEKWIESGNNTCPVTKTELTSFDIVPNHSLRRMIQDWCVQHRSYGVERIPTPRIPVTPYEVTDTCSRILSAAQQGDGNKVIELVKKIKSWGKESERNKKCIVSNGAPLVLAKVFDSFSRGSIEKNFVVLEEILEVLTWMRPVPEEGRFVFLGSSNSLSCLVWFLNDQQKISTRQNASLLLKEMNVESLVKIEGIVESLVNMVKVNVEIGIASTKACLSTIFNLVYSSKSRKLVLERFVELGLISILLENILVDAEKGVCEKALGVLNCLCESKNGVQIAKSNALTLPLVIKKLLRVSELSSSFVVSIVYKICDKAEEGVLIEAIQVGMFQKLLVLLQVGCGESTKEKATELLKLLNGYKSKAECVDSSSLDFMHLKKPF 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03121 443 SUPERFAMILY RING/U-box 32 111 - -
Tsu05g03121 443 SUPERFAMILY ARM repeat 143 419 IPR016024 -
Tsu05g03121 443 Gene3D - 144 435 IPR011989 -
Tsu05g03121 443 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Tsu05g03121 443 Pfam U-box domain 35 106 IPR003613 GO:0004842|GO:0016567
Tsu05g03121 443 CDD RING-Ubox_PUB 39 80 IPR045210 -
Tsu05g03121 443 PANTHER WDSAM1 PROTEIN 9 443 IPR045185 GO:0061630
Tsu05g03121 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 112 IPR013083 -
Tsu05g03121 443 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Tsu05g03121 443 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03121 Tsu-Chr5 41977902 41979671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03121 10 443 U-box Gene Family AT5G37490 43.764 8.22e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03121 - - gmx:100795913 628.632