Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03118 ATGTCTTTCTCGATGATCGATGTTTGCAAGAAGCGAAAACGATATCCGAAGATTTTTAGCTTACAATCTTTCGCTGATCCTGGTTGTCCAATTGCACCTTCAGGTTCTTTCCGTGAAAATGTTCGATTGTTTCTTCAAGAAGCTGGTGAAGTTGAAGATTATACGGTTATGGGAAATCCTCTTTGGTGCACTTTTTTGAATCATGAAAAGACAAATCTTAACGCTCCTTTCTATACTCTTGAAGAACAAGTTTATAATTCTTCTCATCCTTTCTGTGATCATTGTCGTTGTGTAGGTTGGAGTGGACATTTTGTATCAAAGAGAAGGTACCATTTCATAATTCCAATGGATAATGAGTGGCATAAACCCTTAAATGAAGAAGCTCTTGATAATCAGAATCATCTGTTACATGGTGTGATTCATTGCAATGGTTATGGCCATTTGGTATGTCTTAATGGCATTGAAGGTGGTTCTAAGTTTCTCAGTGGGAGAGAAATTATGGAACTATGGGATAGAATTTGCACCAATCTTAGAGCAAGGCAAATTGCAGTGGAAGATGCTTCAAAGAAAAGATCAATGGATCTTAGATTACTTCATGGAGTTGCTTATGGCCACTCTTGGTTTGGTAGGTGGGGCTATAAGTTCTGTCGTGGAAGCTTTGGTGTGACAGAACAAAACTACTATGAAGCAATCGAAGCTCTTGGTTCATTAGTACTTGATGATATTGTAAGAGATTTGAGTAAGACAAAGTATCATAAAGATATCAAACAAATGATTCGTTTCTATAGAGATATGAGTGAAACTCGTATAGTCACAATAAGGGAGCTTCTTAGATTCATGCTCACTGTCAAGTCTCGTCCTCCGGTGTCGAAGATAACAGTCACTTATTCTTCTCCTAATGCTGCTTGTGCTGCTGATTCACCTCCTTGTTCTACTCCAGCATGTTTGTCAAGAAATTCAACCAAACATGCACTTTCAAGTAGATCAAATTCCATGATTAAGGAAAAATCAGCAAGGTATAAGAAATTCAGCACTGCAGTGGCGAATATGGATAGTAGATGGCCAACAAGGAGACTCGAATTCGCAGCTCAAGTGATTGTTGATGCATTAAAAGAAGACAAAGCTATGAAACCAGGTTCAAGTGGCATGACAAGGCAAGATGTGAGGGATGCAGCTAGGCTTCACATTGGTGACACAGGTTTACTTGATTATGTGCTGAAATCACTCAACAATGTGATTGTTGAAAACTATGTCGTTCGTCGCATGGTTAACCCTTCATCAAGGATCCTTGAGTATACCATTCATGAGCTTGGAAAAGAGTTCAAAGCACCTGAACTAGAACATAGTGTAATGACACTTGTAGATAATCCTCAAGTGGAATCAtcaacaccatcatcatcatcaccttcTTCATCTTTGGCGCCTGGTAATGATGTTTACAGTGATGTAGTTTATCTCTACAAGAATGTGTTACTAGGTTATCCAGATTCAGAGCCAGTTGAATTAGCAGTTCAGACAATTCTTGACTGCAGACACTTTGTGAAAGAGTGGAAATTGAGAGATGAAATGGAGCAAGTTTTGACATTTATTTGCCGTTTGAAACCGAATTTCATCGAGAATAAGTCTGATTTAAAAGGGCCATCTTGTGGTGAGATTGTAACTGTTCCACTGCATGCAACAGTTAAAGATTTGAAGCAAGCTGCTGAGGCTGCATTAAGGGACACATATTGCATAGCTGAAAGACTAATTGTAACTGATATCAAAGAATTGATGGATGTGGATGATGAAGACGTTATTTTTGGACAGATTGAATCAGGTGTGAAGCTTTCTGTGAGGGGAATTGGAATAGATTTATGCACACCATTGAAGTATCAAGGAGGTTCTGATAATTGGAAGGTGTGGTGTGAGTGTGGAGCACAGGATGATGATGGTGAGAGAATGATTGCTTGTGATATTTGTGAGGTATGGCAGCATACAAGATGTTGTGGAATAGATGATTCTGAGACAGTTCCACCATTGTTTGTTTGTTCTGGATGTTGTGATTCACTTGTGCCACCAAGGATTGAATCTAGATGCTATGGCTTGGTGGATTGTGCTGATGCTTTTCTGATTTCACCTGAGGCTGCTCATTTGATTGAGTATGGTTATGGGTATTGA 2157 0.3862 MSFSMIDVCKKRKRYPKIFSLQSFADPGCPIAPSGSFRENVRLFLQEAGEVEDYTVMGNPLWCTFLNHEKTNLNAPFYTLEEQVYNSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDNEWHKPLNEEALDNQNHLLHGVIHCNGYGHLVCLNGIEGGSKFLSGREIMELWDRICTNLRARQIAVEDASKKRSMDLRLLHGVAYGHSWFGRWGYKFCRGSFGVTEQNYYEAIEALGSLVLDDIVRDLSKTKYHKDIKQMIRFYRDMSETRIVTIRELLRFMLTVKSRPPVSKITVTYSSPNAACAADSPPCSTPACLSRNSTKHALSSRSNSMIKEKSARYKKFSTAVANMDSRWPTRRLEFAAQVIVDALKEDKAMKPGSSGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVENYVVRRMVNPSSRILEYTIHELGKEFKAPELEHSVMTLVDNPQVESSTPSSSSPSSSLAPGNDVYSDVVYLYKNVLLGYPDSEPVELAVQTILDCRHFVKEWKLRDEMEQVLTFICRLKPNFIENKSDLKGPSCGEIVTVPLHATVKDLKQAAEAALRDTYCIAERLIVTDIKELMDVDDEDVIFGQIESGVKLSVRGIGIDLCTPLKYQGGSDNWKVWCECGAQDDDGERMIACDICEVWQHTRCCGIDDSETVPPLFVCSGCCDSLVPPRIESRCYGLVDCADAFLISPEAAHLIEYGYGY 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03118 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 683 IPR013083 -
Tsu05g03118 718 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 11 685 - -
Tsu05g03118 718 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 11 685 - -
Tsu05g03118 718 SUPERFAMILY FYVE/PHD zinc finger 627 686 IPR011011 -
Tsu05g03118 718 MobiDBLite consensus disorder prediction 456 475 - -
Tsu05g03118 718 ProSitePatterns Zinc finger PHD-type signature. 635 679 IPR019786 -
Tsu05g03118 718 SMART PHD_3 634 680 IPR001965 -
Tsu05g03118 718 CDD PHD_MMD1_like 635 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03118 Tsu-Chr5 41948831 41951521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03118 10 685 PHD Transcription Factor Family AT5G22260 32.597 1.14e-117 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03118 - - mtr:MTR_5g077750 1286.17