Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03117 ATGATTGAGACGAAGGAgatgaaggaagaagatgaagaagtgaAAAACAGGAGTAATAACAATCAAACGACGACGCCGagatcttcttcttctacaccTTCATCTACTACAGATGAAAGCAAGTATGAAGTTCAGGATCTTCGAGATCGATTGAAATCAACAAGAGGAAGCATGTTCAATTTGATAGAGAAGGAATTAGGGCTAAAGATTGGTTGGAGAAAGCTTAGTCGCCAAGCTGATCTTTTTCATGAATCCGTTATCATTGATCCTGATAACAgGTGGTATCGAGCATGGATCAAATTCATATTATTATGGGCAGTATACTCATCTTTCTTCACGCCAATGGAGTTTGGGTTTTTTCGTGGTCTGCCCGAGAATCTATTTATACTGGACATCATAGGACAGATAGCTTTTCTTGTGGACATTGTTTTGCAGTTCTTTGTTGCTTATAGAGACAGTCAGACCTATCGCATGGTCACCAAGCGTACTCCTATTGCTCTCCGGTATCTAAAATCAACATTTGTCGTTGATCTTCTTGGATGTCTGCCCTGGGACCTCCTCTACAAGGCTTGTGGACGAAGAGAGGAAGTGAGGTACCTATTGTGGATCAGATTATATAGGGCAGAGAGAGTCGTACAATTTTTCAGAAATTTGGAGAAAGACATACGTGTCAATTACATTATTGCTCGGATTGTGAAACTTTTAGTTGTTGAACTCTACTGCACCCACACAGCAGCCTGCATTTTCTACTATTTGGCTACTACACTTCCTGAATCTCAAGAGGGTTACACATGGATAGGAAGTTTGAAACTGGGTGACTATAGTTATTCAAGGTTCAGAGAAATTGATCTTTGGAAGCGCTACACAACATCATTGTATTTTGCTATCGTCACAATGGCTACTGTTGGCTATGGAGAGATACATGCAGTAAATATGAGGGAAATGATATTCATAATGATTTATGTTTCATTTGACATGGTTCTTGGTGCTTACTTGATCGGTAACATGACAGCCTTGATAGTCAAGGGATCAAAGACTGAAAAGTTTAGGGACAGGATGACAGATCTGATGAaatatatgaatagaaataaCCTTGGTAGGGATATCCGTGAACAAATAAAGGGCCATGTGCGCCTGCAATTTGAGAGCAGCTACACTGATGCTTCTGTCCTTCAAGACATTCCCATTTCTATTCGATCTAAGATATCCCAATCATTGTATTTGTCATACATTGAGAATGTTTATCTTTTTAGAGGATGCTCTTCAGAATTCATCAATCAGATTGTTACTAGGCTCCATGAGGAGTTCTTTCTTCCAGGAGAAGTTATAATGCAACAAGGATACGCAGTAGATCAACTATATTTTGTCTGTGATGGTGTGCTGGAGGAAGTAGGCATAGCTGATGATGGGTCCGAAGAAACTGTGTCACTTTTAGAGCACAACAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTTCGCGTTTGTGAACTGTGTAGGGTTCTGCGGCTCGATAAACAATCATTTTCAAATATCCTAGAAATATACTTTTATGATGGGAAGAAAGTATTAGACAACCTTATAGAGGGAAAAGAGTCGATTAGAGGTAAGCAATTGGAGTCAGACATCACATTTCATATTGGAAAGCTAGAATCTGAACTTGCTTTGAAGGTCAACAGAGCAGCTTTTGATGGTGATATGTATCAGCTAAAAAGTTTGATTCGAGCTGGAGCTGATCCCAAGAAGACAGATTATGATGGAAGATCACCTTTGCATCTTGGAGCATGCAGAGGATATGAAGATATCACGCTTTTCCTTATTCAAGAAGGTGTAGACATCAACATCAAAGATAACTTTGGGAACACACCGCTACTTGAGGCAGTTAAGAGTGGACACGATCGGATTGCTGCTATACTTGTCAGCAAAGGGGCCTCTCTGGAGATAGATGACAGTGGTAGTTTTTTATGCACAGCAGTTGCAAGAGGAGATTCGGATTATCTTAAAAGGCTTTTATCTAATGGAATGGATCCTAACTTGAAAGATTATGACTATCGAACCCCTCTACATGTTGCTGCATCTGAAGGTTTAATCTTCATGGCAAAGTTGTTATTAGAAGCCGGAGCAAGTGTTTTTACCAAAGACAGATGGGGAAATACACCGCTTGATGAAGCTCGGATGAGTGGAAATAAGAATCTAATAAAGCTGCTGGAAGATGCAAAATCTGCTCAATTGACAGAATTTCCTTTTCCTCAAGAAATTACAGATAAAGTACATCCAAAGAAGTGCACAGTGTTCCCTTTCCATCCATGGGATCcaaaagaacaaagaagaaatgGAATAGTATTATGGGTTCCACACACCATTGAAGAACTAATCAAAACAGCTGCAGAACAGATAGGAATTTCTAATGACTCTTGTATTTTATCAGAAGATGCTGGTAAAATTATTGATGTCAGTATGATTAAGGATGATCAGAAGCTGTATTTAGTCGATAAAACGCATTAA 2523 0.3813 MIETKEMKEEDEEVKNRSNNNQTTTPRSSSSTPSSTTDESKYEVQDLRDRLKSTRGSMFNLIEKELGLKIGWRKLSRQADLFHESVIIDPDNRWYRAWIKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVAYRDSQTYRMVTKRTPIALRYLKSTFVVDLLGCLPWDLLYKACGRREEVRYLLWIRLYRAERVVQFFRNLEKDIRVNYIIARIVKLLVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDYSYSRFREIDLWKRYTTSLYFAIVTMATVGYGEIHAVNMREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDRMTDLMKYMNRNNLGRDIREQIKGHVRLQFESSYTDASVLQDIPISIRSKISQSLYLSYIENVYLFRGCSSEFINQIVTRLHEEFFLPGEVIMQQGYAVDQLYFVCDGVLEEVGIADDGSEETVSLLEHNSSFGEISILCNIPQPYTVRVCELCRVLRLDKQSFSNILEIYFYDGKKVLDNLIEGKESIRGKQLESDITFHIGKLESELALKVNRAAFDGDMYQLKSLIRAGADPKKTDYDGRSPLHLGACRGYEDITLFLIQEGVDINIKDNFGNTPLLEAVKSGHDRIAAILVSKGASLEIDDSGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRTPLHVAASEGLIFMAKLLLEAGASVFTKDRWGNTPLDEARMSGNKNLIKLLEDAKSAQLTEFPFPQEITDKVHPKKCTVFPFHPWDPKEQRRNGIVLWVPHTIEELIKTAAEQIGISNDSCILSEDAGKIIDVSMIKDDQKLYLVDKTH 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03117 840 ProSiteProfiles Ankyrin repeat region circular profile. 689 721 - -
Tsu05g03117 840 SUPERFAMILY cAMP-binding domain-like 344 533 IPR018490 -
Tsu05g03117 840 Gene3D - 556 656 IPR036770 -
Tsu05g03117 840 ProSiteProfiles KHA domain profile. 767 840 IPR021789 -
Tsu05g03117 840 SMART ANK_2a 656 685 IPR002110 GO:0005515
Tsu05g03117 840 SMART ANK_2a 689 718 IPR002110 GO:0005515
Tsu05g03117 840 SMART ANK_2a 625 654 IPR002110 GO:0005515
Tsu05g03117 840 SMART ANK_2a 592 621 IPR002110 GO:0005515
Tsu05g03117 840 SMART ANK_2a 722 752 IPR002110 GO:0005515
Tsu05g03117 840 ProSiteProfiles Ankyrin repeat region circular profile. 625 656 - -
Tsu05g03117 840 SMART cnmp_10 416 534 IPR000595 -
Tsu05g03117 840 ProSiteProfiles Ankyrin repeat region circular profile. 592 624 - -
Tsu05g03117 840 Pfam Cyclic nucleotide-binding domain 436 520 IPR000595 -
Tsu05g03117 840 Gene3D - 98 342 - -
Tsu05g03117 840 PRINTS EAG/ELK/ERG potassium channel family signature 240 250 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu05g03117 840 PRINTS EAG/ELK/ERG potassium channel family signature 131 141 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu05g03117 840 PRINTS EAG/ELK/ERG potassium channel family signature 288 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu05g03117 840 PRINTS EAG/ELK/ERG potassium channel family signature 332 341 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu05g03117 840 SUPERFAMILY Ankyrin repeat 566 744 IPR036770 -
Tsu05g03117 840 ProSiteProfiles Ankyrin repeat profile. 625 657 IPR002110 GO:0005515
Tsu05g03117 840 ProSiteProfiles Ankyrin repeat profile. 592 624 IPR002110 GO:0005515
Tsu05g03117 840 Gene3D Jelly Rolls 400 537 IPR014710 -
Tsu05g03117 840 MobiDBLite consensus disorder prediction 1 17 - -
Tsu05g03117 840 ProSiteProfiles Ankyrin repeat profile. 689 721 IPR002110 GO:0005515
Tsu05g03117 840 Pfam Ankyrin repeats (3 copies) 662 743 IPR002110 GO:0005515
Tsu05g03117 840 Pfam Ankyrin repeats (3 copies) 567 655 IPR002110 GO:0005515
Tsu05g03117 840 Pfam Ion transport protein 96 341 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu05g03117 840 MobiDBLite consensus disorder prediction 18 40 - -
Tsu05g03117 840 Gene3D Helix hairpin bin 343 399 - -
Tsu05g03117 840 Pfam KHA, dimerisation domain of potassium ion channel 766 835 IPR021789 -
Tsu05g03117 840 ProSiteProfiles cAMP/cGMP binding motif profile. 416 519 IPR000595 -
Tsu05g03117 840 ProSiteProfiles Ankyrin repeat profile. 656 688 IPR002110 GO:0005515
Tsu05g03117 840 Gene3D - 657 752 IPR036770 -
Tsu05g03117 840 MobiDBLite consensus disorder prediction 1 45 - -
Tsu05g03117 840 CDD CAP_ED 416 522 IPR000595 -
Tsu05g03117 840 PANTHER POTASSIUM CHANNEL SKOR-LIKE 37 839 - -
Tsu05g03117 840 SUPERFAMILY Voltage-gated potassium channels 89 341 - -
Tsu05g03117 840 PANTHER POTASSIUM CHANNEL AKT1 37 839 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03117 Tsu-Chr5 41931916 41945266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03117 663 742 Ion Channels AT5G37500 34.314 2.07e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03117 K21867 - gmx:100814385 1391.71