Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03108 ATGGGTCGTGGCGGTGGAAAAGTAACTTTGAAACAAATTCAAGATGAGAAACTTCGTAAATCATCTTTCATTCAGAGAAATAAAGGATTAGCAAAAAAAGTGTCTGAATTTTCTAAAAACTTTGGAGTTGAAGCTTGCTTAATTGTGTACGATGGTGATGGTAAACCAATGACTTGGCCACAAAACTCCACAATTATGCGGTCCATGCTTACAAAATATGAGCATCAAAAGAATGAGACAactctaaagaaatttgatgtgaAGGATTATTTTGCAAATAAGAAGAATATAGCTGAAGTTGGGATTTTGAGCGTGTGCAAAAAGATCACGACGAACAAATATCCAACTTGGAGTCGATGTTTCAATAACTTGGAAAGGGAAGAACTCAAAAGTTTCATTGATATCGTAGATTTCAAGATACAAGCTTgtgatcaaagaattaacatGCTGAAAAATACGCAACAAAGTCACCAAACTAATTTCATGCTGAATAATGTTGTCTCTCCACAAGCAAGTCAACCTGATGATACTATGAAGCCGCTTATTGATAATATTAATGACATGAAAGATTTCACTAATCTTATAGAGTGGGACGATCTAATGCCTCAAAATAATGTCTTCTCCTCACATTCAAGTGAACTTGATGTCATGCATAGCATTCCTCAAATGCAACCTATCCTTGCTCCTTTGAAGTCACTTGATAATATTAGTTTGCCTCCAGTTTCATCAACAAAACAACTTGGTGAATTTGTAAAGTTGGATGATCAGGAATGGGCTACACAACTTGGTGAATTTTTAAAGTTGGATGAACTTACAGATAAATCTGATCAAGAATGGGCTACACAACTTATGGATTTGGATAACTGGGCTGCTAATAAATTTGAACAAGATATGTTTGAATGGCAAGATAATTCATTTTTATCTGAAATTGAACAAGAGTATTCAGCTTTGGATGTCTTTTCCCAACAAAGATATGGATTTTAA 984 0.3343 MGRGGGKVTLKQIQDEKLRKSSFIQRNKGLAKKVSEFSKNFGVEACLIVYDGDGKPMTWPQNSTIMRSMLTKYEHQKNETTLKKFDVKDYFANKKNIAEVGILSVCKKITTNKYPTWSRCFNNLEREELKSFIDIVDFKIQACDQRINMLKNTQQSHQTNFMLNNVVSPQASQPDDTMKPLIDNINDMKDFTNLIEWDDLMPQNNVFSSHSSELDVMHSIPQMQPILAPLKSLDNISLPPVSSTKQLGEFVKLDDQEWATQLGEFLKLDELTDKSDQEWATQLMDLDNWAANKFEQDMFEWQDNSFLSEIEQEYSALDVFSQQRYGF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03108 327 SUPERFAMILY SRF-like 5 82 IPR036879 GO:0003677|GO:0046983
Tsu05g03108 327 Gene3D - 15 97 IPR036879 GO:0003677|GO:0046983
Tsu05g03108 327 PANTHER PROTEIN, PUTATIVE-RELATED 5 257 - -
Tsu05g03108 327 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 59 IPR002100 GO:0003677|GO:0046983
Tsu05g03108 327 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Tsu05g03108 327 PANTHER MADS BOX PROTEIN 5 257 - -
Tsu05g03108 327 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03108 Tsu-Chr5 41837849 41838832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03108 1 146 Type I MADS-box Gene Family AT5G55690 31.373 7.88e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu05g03108 SRF-TF 6.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03108 - - mtr:MTR_2g049630 230.72