Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03091 atgggaaGACAACCTTGTTGTGACAAAGTAGGGTTGAAAAAAGGGCCATGGACAGCAGAGGAAGACAAGAGGCTCATCAATTTCATCCTTACTAATGGTCAATGCTGCTGGAGGGCTGTCCCTAAATTGGCAGGTCTATTAAGGTGTGGAAAAAGTTGTAGACTTAGATGGACAAATTACTTGAGGCCAGATTTAAAGAGAGGACTTTTATcagaatatgaagaaaaaatggTGATTGATCTTCATGCTCAACTTGGGAACAGATGGTCTAAAATTGCTTCTCATTTACCTGGAAGAACggataatgaaataaaaaatcattggAATACTCACATAAAGAAAAAGCTCAAAAAAATGGGAATTGATCCGCTCACTCACAAACCACTAGTACTCACTAATGCAACTaatcaaacacaaaatcaaccaatagaagaaaaaaagctACACCAACCAATAGATAAAGAACAACAAAACCAACAACCTTTGACAATTGACATTAATGATACCAAAATTGAATCTAAAATTGAGGAAATGGagaaacaagagacttcaattGAGTCATCAACCATCATTGAAGTCAAAGAAAAAGATGATATTACAATAATACCCTTATTTGACACAATGGAGCTAATGGATGGATTTTGTATTGATGAAGTTCCAATGATAGAACCTAATGAGATTATAGTGTCTAATTCCTCTTCATCcacttcttcatcatcttcatcaaataaTTCAACCAATTTTCTTGAAGATCTTAATCTCCTTGATTTTGAATGGTCTAATAAGGAAGAGAACAATACCAATAATATGGCATTTTGGGATGATGATTTTATTAGTAGCTTGAATTTGctaatgaatgatgatgattatgatgttaATAATGGTGAAAGAAAGCAAGAATTTGATTCTCATGCTCCTCTTAGCAACAACTCAAGAATGGTCACAGATTCAGAATCTTGGGcatatgatttgttttga 978 0.2904 MGRQPCCDKVGLKKGPWTAEEDKRLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPLTHKPLVLTNATNQTQNQPIEEKKLHQPIDKEQQNQQPLTIDINDTKIESKIEEMEKQETSIESSTIIEVKEKDDITIIPLFDTMELMDGFCIDEVPMIEPNEIIVSNSSSSTSSSSSSNNSTNFLEDLNLLDFEWSNKEENNTNNMAFWDDDFISSLNLLMNDDDYDVNNGERKQEFDSHAPLSNNSRMVTDSESWAYDLF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03091 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu05g03091 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu05g03091 325 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 293 - -
Tsu05g03091 325 CDD SANT 16 61 IPR001005 -
Tsu05g03091 325 SMART sant 66 114 IPR001005 -
Tsu05g03091 325 SMART sant 13 63 IPR001005 -
Tsu05g03091 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu05g03091 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu05g03091 325 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Tsu05g03091 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu05g03091 325 CDD SANT 74 112 IPR001005 -
Tsu05g03091 325 Gene3D - 11 67 - -
Tsu05g03091 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu05g03091 325 Gene3D - 70 163 - -
Tsu05g03091 325 PANTHER MYB TRANSCRIPTION FACTOR 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03091 Tsu-Chr5 41633117 41636125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03091 1 325 MYB Transcription Factor Family AT5G16600 48.378 2.76e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g03091 Myb_DNA-binding 7.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03091 K09422 - gmx:100803624 441.81