Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03084 ATGAGAATATATAATCCTAATCAAGAAACTTTGGAAGCCTTAAGAGACTCTAACATAGAACTTGTCATTGGGGTCCCTAATGAAGACATTCAATCAATAGCCAATGATGTTTCATCAGCTACTAATTGGGTCCAAAACAATATACTAACATACTCtcaaaatgtcaattttaagtACATTGTTGTTGGAAATGAAATAGATCCTAGTAATGATCCAACATCACAATTTGTTCTACCTGCAATGCAAAACATTTATACATCACTTGCATCTTCAAAtctacaaaatcaaattaaggtTTCAACAGCTATACAAATGGGCTTATTAGGAAGTTCATATCCTCCATCATCAGGAGCATTTAgttcttcttcaatttcataTATAACTTCAATAGTTAATTTTCTTGTTAGCAATGGTGCACCACTTCTTGCTAATGTGTATCCTTACTTTGCTTATATAAGTAATACACAAAGCATTCCTCTTGACTATGCTCTTTTTAAGCAACAAGGAAACAATGATGTTGGGTACCAAAATCTCTTTGATGCACAATTAGATTCAATATACGCTGCTCTTGAGAAAGTCGGAGGTATAAAAGTCTGCTCTCATGAAACACAACTCCAATTCATAATTGAGTTTAGAGTAACCATTTCTACCATCATCTCATCATGTGATGTGGGAGAAGATTTATCGAAAATTCTGGAAACTTCATGTTTAAGGATGTCAAAGagGTATGCCGAGGTTGACccaaaatttgttaaacaaTTTAAGGATGAGTTGGGTGGGATATGGAGATTAAAAGATGAATGTGGAAATAGGCACATTGTGAAGTTCAACAATTCAGTTACGAGTCATTTCGTTATTGATGGTATGATTCAACTGAGACAGTTTTATGGTTTGACCGGAAGTAATCTACTTTTATTTAGCTACAAGGGTAACAACAAGTTTCGTCTCACTGTGTTCAAGAAAGAagttgaagaatatagtttccCTGCATTCCACAGTCAGAGTAGTAagcctaaacccaaaaaatttgTAGTGACTCTGACAAAGTACACTGCTTCGGAATCAGAACTGAAAGACTTTGCTGAATTTATGAGGGGTTGCAAGCAACATAAAAGTCTTTATTTTATGGGACCATCAGCGAGTTTTGTTCCGTGCAAGCTTTTGATCTGGGAAGGCCGCAGGAGTTGTGTGAAGTTTGGGTCTGGGTGGAAGAAGTTTTGTGCTGATAGTGGGTTCAAAGCTGGTGATGTGCTGACATTTGAATGCAAAGATGCAAAGAAATCTAGAATTATCTTTGTGACCAAGACTTCTAATTAG 1317 0.3341 MRIYNPNQETLEALRDSNIELVIGVPNEDIQSIANDVSSATNWVQNNILTYSQNVNFKYIVVGNEIDPSNDPTSQFVLPAMQNIYTSLASSNLQNQIKVSTAIQMGLLGSSYPPSSGAFSSSSISYITSIVNFLVSNGAPLLANVYPYFAYISNTQSIPLDYALFKQQGNNDVGYQNLFDAQLDSIYAALEKVGGIKVCSHETQLQFIIEFRVTISTIISSCDVGEDLSKILETSCLRMSKRYAEVDPKFVKQFKDELGGIWRLKDECGNRHIVKFNNSVTSHFVIDGMIQLRQFYGLTGSNLLLFSYKGNNKFRLTVFKKEVEEYSFPAFHSQSSKPKPKKFVVTLTKYTASESELKDFAEFMRGCKQHKSLYFMGPSASFVPCKLLIWEGRRSCVKFGSGWKKFCADSGFKAGDVLTFECKDAKKSRIIFVTKTSN 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03084 438 SUPERFAMILY DNA-binding pseudobarrel domain 338 430 IPR015300 -
Tsu05g03084 438 PANTHER GLYCOSIDE HYDROLASE FAMILY 17 PROTEIN 1 198 - -
Tsu05g03084 438 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 1 198 IPR044965 GO:0004553|GO:0005975
Tsu05g03084 438 Gene3D Glycosidases 1 204 - -
Tsu05g03084 438 Pfam Glycosyl hydrolases family 17 1 197 IPR000490 GO:0004553|GO:0005975
Tsu05g03084 438 Gene3D - 330 435 IPR015300 -
Tsu05g03084 438 SUPERFAMILY (Trans)glycosidases 1 204 IPR017853 -
Tsu05g03084 438 Pfam B3 DNA binding domain 358 427 IPR003340 GO:0003677
Tsu05g03084 438 ProSiteProfiles B3 DNA-binding domain profile. 390 437 IPR003340 GO:0003677
Tsu05g03084 438 Gene3D - 229 323 IPR015300 -
Tsu05g03084 438 CDD B3_DNA 341 421 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03084 Tsu-Chr5 41522181 41526282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03084 1 195 Glycoside Hydrolase AT4G16260 52.261 1.70e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu05g03084 Glyco_hydro_17 5.8e-61 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03084 - - mtr:MTR_4g076490 229.18