Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03074 ATGGCACCTGTTTCATTGCCTCCAGGTTTTAGGTTTCACCCTACCGATGAAGAACTTGTAGCTTATTATCTAAATAAGAAGATCAATGGCCATAAGATTGATTTAGAGATCATAGCTGAAGTTGATCTCTATAAGTGTGAACCGTGGGACTTGCCAGGAAAATCATTATTACCTGGAAAAGATATGGAGTGGTATTTCTTTAGCCCTCGTGATAGAAAGTACCCTAATGGATCAAGGACGAACCGAGCAACTAAATCTGGATATTGGAAGGCAACGGGAAAGGATCGAAAAGTGAATTCTCAAGCTCGAGCAGTGGGGATGAAGAAAACCCTAGTTTACTATCGAGGAAGGGCACCCCATGGATCTCGTACAAATTGGGTTATGCATGAATATCGTCTAGATGAGAGGGAATGTGAAACCACTCCAAGCTTGCAGgATGCGTATGCTCTTTGTCGTGTGATCAAGAAGAGTACAGTGATTGTGCCAAAAGTTGGAGGACAATATAGTAATCTTACAAGCCATGACAACCAGATTACAAGCAACCAATCACCAAGTGTTGAGCTATACTCTGAAGGAAGGGGTGAAGATTTAGAAAGTTCAAATTATTTGATGCAAATGAATAATTCTTGTTCACCTCACAATATGGGAAGTGAGACTTCTCTCAATATAAATGGTGGGATAACGGATCATGGAAATTGGTCACAATTCTCAAATGATCAAGGACCATTATTTAGTCTTCCAACTTCTTCATTTACTAATTATGGAGCCATAACATACCCTCCCTCCAAGATGGATGTTGCACTAGAGTGTGCAAGGATGCAACATAGGTTCTCTATGCCTTCATTGGAGGTGGAGGATTTTTCTCAAGGAAGCAGAACTAAAAATGATAATTTGGAGGAAATTCTATCACTTAATTATGCTTCTCATGAATTGATGAATTACTCAAGTTATTCACAAGCATTGGGTGATAATGAAAATTATGCTCCTTATGAAGATGATTTTACTTTCATGGTTGGTAGTAACTACAATAATCACATAAATGATATGAGCTCCATGAGATATGTTGACAAAACTTGGGAGGATTTGAACACAAGATCCATAGATATAGGTGGTTTAGAGGATCAAGAGTTAAAGGAAAAGAGGATGGTAGAGAATTTGAGATGGATTGGAATGCCAAGAGAAGATTTTGAAAAGATGGAACAAAAGATTGTCCCAATGGAGGATATTTCATGCTTCCAAACTTTAAGGGAACAAAATGGCATGCAAGAATATGAACAAAACTATGGCAACCTCGAGCAAAATGACACTTATGTCAATGAATTCTCATTAGGCTTCATTAATGATGGTGAcactaatgaaaattttatagaaGATGGTAACATGGATGATTACTCAAATTCTCCAAGCTTTGAGTTCATTGAAGAAATAAAGGTGAGTCATGGAATGTTGGTTTCAACTCAACAAGTAGCCATGACATTGTTTCACCAAGTTGTTCCTTCACAAACACTCCAAGTTCAACTCAATCCAATGATGGAAAATAAAGTCAACTCTATAGAGAATGTAGAGGCAGTTATGATGATAATGGAGAATCAAGGGTCTTTCTTTAGGAAGTTCAAGGCATATGTGATGGGGAAGTGGAAGAACCTATTCAATCCATCAAAGAAAATAGCAAGTTTGGttgtatttgtattttcacTTCTTTTGATGCATTGTGTTTATTTGGAGGAAGAAGTGGAAATATGCAAATCAAAGTCAAATaatgtgaaagaaaaaagaatgagAGAATCATATGAGAGAATCAAATGGAATGAGTCAAAAGAGGTTTGGTTTGTTGGTGTTAAAAGTGAGAAAGGATTAAGTGTGGTCTTGAAGAAAATAGGCATTTTCCTCACCATATCTTTGGCTCTTTGTACCATGTGGGCTAGCCATAGTTAA 1935 0.3643 MAPVSLPPGFRFHPTDEELVAYYLNKKINGHKIDLEIIAEVDLYKCEPWDLPGKSLLPGKDMEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQARAVGMKKTLVYYRGRAPHGSRTNWVMHEYRLDERECETTPSLQDAYALCRVIKKSTVIVPKVGGQYSNLTSHDNQITSNQSPSVELYSEGRGEDLESSNYLMQMNNSCSPHNMGSETSLNINGGITDHGNWSQFSNDQGPLFSLPTSSFTNYGAITYPPSKMDVALECARMQHRFSMPSLEVEDFSQGSRTKNDNLEEILSLNYASHELMNYSSYSQALGDNENYAPYEDDFTFMVGSNYNNHINDMSSMRYVDKTWEDLNTRSIDIGGLEDQELKEKRMVENLRWIGMPREDFEKMEQKIVPMEDISCFQTLREQNGMQEYEQNYGNLEQNDTYVNEFSLGFINDGDTNENFIEDGNMDDYSNSPSFEFIEEIKVSHGMLVSTQQVAMTLFHQVVPSQTLQVQLNPMMENKVNSIENVEAVMMIMENQGSFFRKFKAYVMGKWKNLFNPSKKIASLVVFVFSLLLMHCVYLEEEVEICKSKSNNVKEKRMRESYERIKWNESKEVWFVGVKSEKGLSVVLKKIGIFLTISLALCTMWASHS 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03074 644 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Tsu05g03074 644 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Tsu05g03074 644 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 374 - -
Tsu05g03074 644 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Tsu05g03074 644 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Tsu05g03074 644 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03074 Tsu-Chr5 41434705 41440743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03074 1 639 NAC Transcription Factor Family AT1G65910 40.429 4.32e-149 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu05g03074 NAM 1.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03074 - - gmx:100809019 874.774