Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03072 ATGCTTATGGGAAAGGCACTAATAGTCAATATTAGTTGCATTGATCCTAACTCGTATAAGGATGAATATAGTTATGATATATTGGCTAGGTCTAAGCAATGCAGTCTAAAGTCACAATCTTGTCCGAAGAATGTCCAAAGGATTGCTTTAGCAACAATTTCATCTGAGTCCCTCATGATTCCATTTCCATTTGAGGATGCAGATAAATATCTTCATAAAGAAAATGACTGGGAAATTTTCACCCTAAGAGTAAAGAGTTCAGACACGATACTCACTGTGAAGCACAAGATTCTTGACTTAGAAGGGATTCCGTTGCTGATGCAAAGTCTGCTCCTTGATGGTATGCAACTAGATTACGAACCAACGCTTGCACATTACAAAATCGAAGATGAGTCAATCCTCAACCTTGTCCTCCGCTTATGTGGAAGTTAG 432 0.3866 MLMGKALIVNISCIDPNSYKDEYSYDILARSKQCSLKSQSCPKNVQRIALATISSESLMIPFPFEDADKYLHKENDWEIFTLRVKSSDTILTVKHKILDLEGIPLLMQSLLLDGMQLDYEPTLAHYKIEDESILNLVLRLCGS 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03072 143 SMART ubq_7 64 139 IPR000626 GO:0005515
Tsu05g03072 143 PRINTS Ubiquitin signature 99 119 IPR019956 -
Tsu05g03072 143 PRINTS Ubiquitin signature 78 98 IPR019956 -
Tsu05g03072 143 PRINTS Ubiquitin signature 120 141 IPR019956 -
Tsu05g03072 143 SUPERFAMILY Ubiquitin-like 54 142 IPR029071 -
Tsu05g03072 143 PANTHER POLYUBIQUITIN 10 79 142 - -
Tsu05g03072 143 Gene3D - 54 143 - -
Tsu05g03072 143 PANTHER UBIQUITIN 79 142 - -
Tsu05g03072 143 ProSiteProfiles Ubiquitin domain profile. 67 143 IPR000626 GO:0005515
Tsu05g03072 143 Pfam Ubiquitin family 78 140 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03072 Tsu-Chr5 41420749 41421466 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03072 77 143 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 53.731 7.91e-14 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03072 - K02977 ats:109763162 65.855