Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03070 ATGGAAGATGCCATGGAGACTGTTGATTCCACAATAGATAGCTCTGTTCCTCTGATGATTTCTAACTCTAAATTGCTCGATTGTTGCATCTGTTTCCAACCCTTAACTATTCCTGTTTTTCAGTGTGATAATGGTCATATTGTTTGCTCTACTTGTTATCCTAAACTTAAGAACAAGTGTCAGAAGTGTTCATTGCGCATTAGCTCAAAACGTTGTAAAGTTGTTGAGAATTTGTTGTTATCTATCGAAATGCCATGTCGGAATGCAAAACATGGTTGCAGGGAGAAAATAAGTTACCTTGGAAATAGAAAGCATGAAGAAGAATGCAGCCATGAACCATGTTACTGCCCCTTTTCAGATTGTGACTTTGTTGCATCATCGGAAGTGTTGTCCAACCATTTAAGCCATACACACGGTAATTCTCCGATTGGATTTTGTTATGGTAACTCCTTCACTGTCTCCTTGAAGTCTAATGATGAAACCATTGTTCTTCAAGAGGAAAATGATGACAAACTATTTATTCTTAATAATAGTACTATGAGTTTGGGAAATGCAGTCAACATTTGCTGCTTTGGTCCTAACTCTTCTGAGTCCGAGTATAGTTATGATATACTGCATAGGTCTTATATAAGCAAACTGATGTTGCATTCTTTTGTGAAAAACGTCCAACGGGTTACTTTAGCAACTCTTTCATCTGAATTCCTTGTGATTCCAGTTGGTTCTTCAGAACCTCTCGAGCTAGAAATTTGCATAACCCCAATGATGCAAATTTACATAATGGACCAGACTGGAAAGAGGATCCCCCTGACGGTTAATAGTTCAGACACTATAGTCAATGTGAAGTTGAAGATTGTTGACAAGGTATACTTCCCAGTGCACCAGCAACGTCTGATCTTTGATGGTAAGCAACTAGATGACAGAATGACCCTTGCTAATTGCAACATTGAAGATAAGTCAACTCTCCACCTCGTCCGCCGCCTCGCTGGGAATTAG 993 0.3917 MEDAMETVDSTIDSSVPLMISNSKLLDCCICFQPLTIPVFQCDNGHIVCSTCYPKLKNKCQKCSLRISSKRCKVVENLLLSIEMPCRNAKHGCREKISYLGNRKHEEECSHEPCYCPFSDCDFVASSEVLSNHLSHTHGNSPIGFCYGNSFTVSLKSNDETIVLQEENDDKLFILNNSTMSLGNAVNICCFGPNSSESEYSYDILHRSYISKLMLHSFVKNVQRVTLATLSSEFLVIPVGSSEPLELEICITPMMQIYIMDQTGKRIPLTVNSSDTIVNVKLKIVDKVYFPVHQQRLIFDGKQLDDRMTLANCNIEDKSTLHLVRRLAGN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03070 330 Gene3D - 251 330 - -
Tsu05g03070 330 SMART ubq_7 255 326 IPR000626 GO:0005515
Tsu05g03070 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 13 257 - -
Tsu05g03070 330 Pfam Ubiquitin family 262 327 IPR000626 GO:0005515
Tsu05g03070 330 Pfam Seven in absentia protein family 71 222 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tsu05g03070 330 ProSiteProfiles Ubiquitin domain profile. 255 330 IPR000626 GO:0005515
Tsu05g03070 330 ProSiteProfiles Zinc finger SIAH-type profile. 81 139 IPR013010 GO:0008270
Tsu05g03070 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 134 IPR013083 -
Tsu05g03070 330 PRINTS Ubiquitin signature 307 328 IPR019956 -
Tsu05g03070 330 PRINTS Ubiquitin signature 286 306 IPR019956 -
Tsu05g03070 330 PRINTS Ubiquitin signature 265 285 IPR019956 -
Tsu05g03070 330 SUPERFAMILY TRAF domain-like 82 251 - -
Tsu05g03070 330 SUPERFAMILY Ubiquitin-like 237 329 IPR029071 -
Tsu05g03070 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 13 257 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03070 Tsu-Chr5 41416413 41418225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03070 255 330 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 61.842 1.89e-21 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03070 K04506 - gmx:100797881 233.802