Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03069 ATGCTTATGGGAAAGGCAGTACTAGTCAATATCAGTTGCATTGGTCCTAACTCCTTTAAAGATGAATATAGTTATGATATATTGGTTAGGTCGAAGAAATGCAGTCtgaagtttcaattttttctcgAGAATGTCCAACGGATTGCTTTAGCAACTATTTCATCTGAGTTCCTCATAATTCCATTTGGTTATTTTGGTTCTTCTGAACCTCTCACGCTAGAAATTTGCATAAACCGCATGATGCATATCTTCATAAAGACATTGACTGGGAAAACTGTCTCCATAAGAACAAAGAGTTCAGACACGGTAATCGATATAAAGCTCAAGATTCTTGACAAGGAAGGATATGGAGTGCATGAGCAACGTCTGATCTTTGACGGTAAACAACTAGATGACAACATGACCCTTGTGttggattaa 420 0.3548 MLMGKAVLVNISCIGPNSFKDEYSYDILVRSKKCSLKFQFFLENVQRIALATISSEFLIIPFGYFGSSEPLTLEICINRMMHIFIKTLTGKTVSIRTKSSDTVIDIKLKILDKEGYGVHEQRLIFDGKQLDDNMTLVLD 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03069 139 PANTHER POLYUBIQUITIN 11 79 136 - -
Tsu05g03069 139 PRINTS Ubiquitin signature 112 132 IPR019956 -
Tsu05g03069 139 PRINTS Ubiquitin signature 91 111 IPR019956 -
Tsu05g03069 139 PANTHER UBIQUITIN 79 136 - -
Tsu05g03069 139 SUPERFAMILY Ubiquitin-like 62 136 IPR029071 -
Tsu05g03069 139 Gene3D - 80 131 - -
Tsu05g03069 139 Pfam Ubiquitin family 83 136 IPR000626 GO:0005515
Tsu05g03069 139 ProSiteProfiles Ubiquitin domain profile. 81 136 IPR000626 GO:0005515
Tsu05g03069 139 SMART ubq_7 81 139 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03069 Tsu-Chr5 41414486 41415059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03069 81 137 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 57.895 9.24e-17 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03069 - K08770 vg:15613828 74.3294