Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03068 ATGGAATACCAAAATCCAACACATCAAACCGCTAGAGGATCTAATtcaAAAGCTGCAATGAAGACTATTGATTCCGCAAGAGATGACTCTGTTTCTCTGATGATTTCCAACCCTAAGTTGCTAGATTGTTGTGTTTGTTTTCAACCCTTAACTATTCCGGTCTTTCAGTGTGATAATGGTCATATCGTTTGCTCTACATGCTGTCTTGAACTCAAGAACAAGTGTCACAAGTGTACATTGGGCATTAGCTCAAAACATTGTAAAGCCATTGAGAATCTATTGCTATCTATCGAAATGCCATGTCCAAATACAAAATATGGTTGCCGGGAGAAAATAAGTTATCTTGAAAAAAGAAAGCATGAAGAAGAATGCATCCATGAACCATGTTACTGCCCCTTTTTAGGTTGTGACTTTGTTGCCTCATCAGGATTTTTGTCCAACCATTTCAACTATGAACACGGGTATTCTCAAATCAAATTTTCGTATGGTCACTTCTTTGTTGTCTCCTTGATGTCAAATGATGAAACTATTGTTCTTCAAGAGGAAAATGACGGCAAATTGTTTATTCTCCACAATAGTACTACATTTTATGGAAATGCTGTCAATATTTGCTGCATTGGTCCTAATTTTCCTGCGTTCGAGTATAGTTATGATATAATGGCTAGGACTCAGAAATGCAAACTGAAATTACAATCTTTTGCGACAAACATCAAACGGTTTACTTTAACAACTTTTTCATCAAACTTCCTTATGATTCCATCGGATTCTTCTAAACCTCTCAGGCTACACATTTGCATAAACCCCCGCACGATGCAAATATTGATAAGGGACTTGGATGGAAAGACGATTACCGTTATGGTTAAGAGTTCAGACACAGTATTCAATGTGAAGTTGGAGATTCTTGACAAAAAAGACATCCCGGTGCAAGATCAACGTCTGATATATACAGGTAGGCAACTAGATGACAACATGACCCTTGCCCATTACAACATCAAAGCGGCGTCAACACTCCACCTCTGCCTCCGTATCATTGGGGACTAG 1041 0.3833 MEYQNPTHQTARGSNSKAAMKTIDSARDDSVSLMISNPKLLDCCVCFQPLTIPVFQCDNGHIVCSTCCLELKNKCHKCTLGISSKHCKAIENLLLSIEMPCPNTKYGCREKISYLEKRKHEEECIHEPCYCPFLGCDFVASSGFLSNHFNYEHGYSQIKFSYGHFFVVSLMSNDETIVLQEENDGKLFILHNSTTFYGNAVNICCIGPNFPAFEYSYDIMARTQKCKLKLQSFATNIKRFTLTTFSSNFLMIPSDSSKPLRLHICINPRTMQILIRDLDGKTITVMVKSSDTVFNVKLEILDKKDIPVQDQRLIYTGRQLDDNMTLAHYNIKAASTLHLCLRIIGD 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03068 346 SUPERFAMILY Ubiquitin-like 264 345 IPR029071 -
Tsu05g03068 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 149 IPR013083 -
Tsu05g03068 346 Pfam Ubiquitin family 273 342 IPR000626 GO:0005515
Tsu05g03068 346 SUPERFAMILY TRAF domain-like 97 266 - -
Tsu05g03068 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 16 270 IPR044286 -
Tsu05g03068 346 PRINTS Ubiquitin signature 281 301 IPR019956 -
Tsu05g03068 346 PRINTS Ubiquitin signature 323 344 IPR019956 -
Tsu05g03068 346 PRINTS Ubiquitin signature 302 322 IPR019956 -
Tsu05g03068 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 16 270 - -
Tsu05g03068 346 Pfam Seven in absentia protein family 88 248 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tsu05g03068 346 ProSiteProfiles Ubiquitin domain profile. 271 346 IPR000626 GO:0005515
Tsu05g03068 346 SMART ubq_7 271 342 IPR000626 GO:0005515
Tsu05g03068 346 Gene3D - 264 346 - -
Tsu05g03068 346 ProSiteProfiles Zinc finger SIAH-type profile. 96 154 IPR013010 GO:0008270
Tsu05g03068 346 ProSitePatterns Ubiquitin domain signature. 297 322 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03068 Tsu-Chr5 41410012 41412214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03068 271 345 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 58.667 1.60e-22 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03068 K04506 - gmx:100778869 251.136