Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03067 ATGGAACCTCCGATTATTTCCAATCCTAGTTTGCTGGATTGTTGCAATTGTTTTCAGCCCTTAAGTATTCCCGTCTTTCAgTGTGATAATGGTCATATTGTTTGCTCTACTTGTTGTCTTAAACTTAAGAACAAGTGTCAGAAGTGCTCATTGCGCATTAGCTCAAAACGTTGTAAAGTTGTTGAGAACCTATTGTTATCTGTCGAAATGCCATGTCGGAATGCAAAACATGGTTGCAGGGAGAAAATAAGTTACATTGGAAATAGAAAGCATGAAGAAGAATGCATCCATGAACCATGTTACTGCCCCTTTTTAGGTTGTGACTTTGTTGCATCATCAGAAGTGTTGTCCAACCATTTCACCCATAAACACGGGGATTCTCGAACCCGATTTTCTTATGGTCAAAGCTTCATTGTCTACATGAAGTCTAATGACGAAACTATCGTTCTTCAAGAGAAAAATGATGGAAAGCTATTTATCCTAAATAATAGTACTATGATTTTGGGAAATGCAGTCAATATTTGCTGCATTGGTCCTAACTCATCTGAGTCCGAGTACAGTTATGATATTTTGGCTAGATCTCCGCAATGCAAACTGAAATTCCAGTCTTATTCAAAGAATGTCCCGCGGTTTACTTTAGCAACTCCTTTATCAAGGTTCCTTATGATTCCATTTTGTTCTTCAGCATTTCTCAAGCTAGAAATTTGCATAAACCCAGCCCCCATGATGCAAATATTCAtaaagatgttggaccaaaggTTGTTCTCTCTGAGGGTTAAGAGTTCAGACACGATATTCCATGTCAAGAAGAAGATTCTTGACAAGGAAGGGATCCAATGTATCGATCAACGTCTGATCTTTACCGGTAAGCAACTACAAGACGATCAGACCCTTGCCGATTGCAACGTCAAAGAGAAGTCAACCCTCCACCTTGTCCTCCGCTTGATGGGGAGCTAG 957 0.3887 MEPPIISNPSLLDCCNCFQPLSIPVFQCDNGHIVCSTCCLKLKNKCQKCSLRISSKRCKVVENLLLSVEMPCRNAKHGCREKISYIGNRKHEEECIHEPCYCPFLGCDFVASSEVLSNHFTHKHGDSRTRFSYGQSFIVYMKSNDETIVLQEKNDGKLFILNNSTMILGNAVNICCIGPNSSESEYSYDILARSPQCKLKFQSYSKNVPRFTLATPLSRFLMIPFCSSAFLKLEICINPAPMMQIFIKMLDQRLFSLRVKSSDTIFHVKKKILDKEGIQCIDQRLIFTGKQLQDDQTLADCNVKEKSTLHLVLRLMGS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03067 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 5 240 - -
Tsu05g03067 318 SUPERFAMILY TRAF domain-like 68 237 - -
Tsu05g03067 318 ProSiteProfiles Zinc finger SIAH-type profile. 67 125 IPR013010 GO:0008270
Tsu05g03067 318 SMART ubq_7 243 314 IPR000626 GO:0005515
Tsu05g03067 318 SUPERFAMILY Ubiquitin-like 234 317 IPR029071 -
Tsu05g03067 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 5 240 IPR044286 -
Tsu05g03067 318 Gene3D - 239 318 - -
Tsu05g03067 318 Pfam Ubiquitin family 245 315 IPR000626 GO:0005515
Tsu05g03067 318 ProSitePatterns Ubiquitin domain signature. 269 294 IPR019954 -
Tsu05g03067 318 ProSiteProfiles Ubiquitin domain profile. 243 318 IPR000626 GO:0005515
Tsu05g03067 318 PRINTS Ubiquitin signature 295 316 IPR019956 -
Tsu05g03067 318 PRINTS Ubiquitin signature 253 273 IPR019956 -
Tsu05g03067 318 PRINTS Ubiquitin signature 274 294 IPR019956 -
Tsu05g03067 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 120 IPR013083 -
Tsu05g03067 318 Pfam Seven in absentia protein family 57 207 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03067 Tsu-Chr5 41317319 41405705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03067 243 318 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 61.842 2.12e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03067 K04506 - gmx:100797881 239.195