Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03066 ATGGAACTTTCCAACCCTAGCTTGCTGGATTGTTGCAATTGTTTTCAACCCTTAACTATTCCCGTCTTTCAGTGTGATAATGGTCATATTGTTTGTTCTACCTGTTGTCCTAAACTTAAGAACAAGTGCCACAAGTGCTCATTGCGCATTAGTTCAAAACGTTGTACAACCATTGAGAATCTATTGCAATCTATCAAAATGTCATGTCCAAATGCAAAACATGGTTGCCGACAGAAAATAAGTTACTCTAGAAAGAGGAAGCATGAAGAAGAATGTATCTTTGAGCAATGTTACTGCCCTATTTCAGGTTGTGGCTTTGTTGATTCATTAGAAGTGTTGTCCAACCATTTCAGCCATAAACACAAGGACTcgcaaattaaattttcttacCGTCATTCCTTCATTGTCTCATTAAAGTCTACCGATGAAACTATCGTTCTTCAAGAAGAAAATGATGGCAAACTATTTATTCTAAATAATAGTATTATGACTTTGGGGAATTTAGTCAATATTTGCTGCATTGGTCCTAACACTTCTGAGTCGAAGTATAGTTATGATATATTGGCTAAGTCTGAGATATGCAACTTGAAATTAGAGTCTTTTGCAAAGAACGTCAGACGATTTACTTTAGCAACTCTTTCATCAGGGTCCCTTGTGATTCCAGTTGGTTCTTCTGAACCTCTCAAGCTGGAAATTTGA 699 0.3591 MELSNPSLLDCCNCFQPLTIPVFQCDNGHIVCSTCCPKLKNKCHKCSLRISSKRCTTIENLLQSIKMSCPNAKHGCRQKISYSRKRKHEEECIFEQCYCPISGCGFVDSLEVLSNHFSHKHKDSQIKFSYRHSFIVSLKSTDETIVLQEENDGKLFILNNSIMTLGNLVNICCIGPNTSESKYSYDILAKSEICNLKLESFAKNVRRFTLATLSSGSLVIPVGSSEPLKLEI 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03066 232 Pfam Seven in absentia protein family 54 207 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tsu05g03066 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 3 232 - -
Tsu05g03066 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 117 IPR013083 -
Tsu05g03066 232 ProSiteProfiles Zinc finger SIAH-type profile. 64 122 IPR013010 GO:0008270
Tsu05g03066 232 SUPERFAMILY TRAF domain-like 64 191 - -
Tsu05g03066 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 3 232 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03066 Tsu-Chr5 41305233 41307638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03066 8 221 C3H Transcription Factor Family AT2G41980 26.222 3.57e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03066 K04506 - gmx:100778869 231.876