Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03065 atgtctaCATATAGTGAAGCAACGGTGCATCTAGAAAGTGATACAGATGAAGTAGAAATTAATAGTGGTAATGGCATGTCTAGTCAGCAAGGGAAAGAAAACTCCAATGATTACAAATGTATCAGTGATTTGACAGATGATGATATAAGGGGTATGGAATTCAGCACAGAGAACGAAGCTACAAAATTCTATGAATTGTATGCACATTTACATGGGTTTGCTGTAAGGAAGGATGACATGCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAGAGAACGAAGCTACAAAATTCTATGAATTGTATGCACATTTACATGGGTTTGCTGTAAGGAAGGATGACATGCAACGTGATCGTGAAAATAGGATTGTTATGCGTCAATTACTTTGCAATAAAGAGGGTACAAGTGACGGTTCTTCGAGGCCAACTATGCGAACTGGTTGTCAAGCGAAACTTCGACTACGTTATGATATTgttcataaaaaatttagagtttCTGTTTTCAACCCTACTCACAACCATGAACTAACTCCTGAACGTTTTGTTCATTTGATTCCTAAATATCGTAAATTGACTGAGGCAGATAAGCAAGTTGTTGATGGCTTGCATTCCCAAGGCGTTAGAACTTGTCATATCGTGGGTTATTTGATGGGTCAAAAGGGTGGTGGTCATGAAGGTCTCGGGTTTATTAGAAAAGACCTACATAACTACACAGATCATCAAGCAAGAGTTAGAATAGCAGAAGGAGATACATATGCGACTTTGAGTTATTTCCAGGGTAAGGCTGACGGTGATGCATCATTTTTTTCAGAGTTTAGTTTTACAGATGATGGACGCCTAGAAAACATCTTTTGGGCAGATGCTACCAGTAGGTTTGACTATGAGTGCTTCGGTGACGTTGTTGCTTTTGACGCGACTTATAGAAAGAACAGGTATGGCAAACCCCTTGTAATTTTTTCTGGATATAACCACCATGGAGAAACAACAATTTTTGCTGCTGCTTTAGTTTGTGATGAAACAATTAAGACCTACAAGTGggttttaaatatgttttcaaaggCCATGTATGGGAAACATCCAAAAGCAGTGATTACTGATGGTGATAAATCAATGAGAGAAGCCATTAGAGTTGTCTTTCCAAATACAAGGCACCGTCTTTGCGCATGGCATCTACATAGAAATGCTGGTGAACATGTgaagaataaattttttttagaagagtTTAAGTCGCTAATGTATTCTCATTATACACCTGAAAAGTTTGAATATGAGTGGAAGAGGGTTGTTGATAGTTATGGTGTATCAAACAATAAATGGGTAAATAAAACTTATGAATTGAAGAGAATGTGGGCAAGTGCATACATGCGAGACCATTTTTTATGTGGAGTTCGAACTACATCAATTTGTGAAGGTGTGAATTCATTTATCAAGAAGTATgtcaaacacaaaaacaacattGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGACTATAGACATAATGAATTATTGTCGGATTTCAAATCATTCTATTATCATCATGTGCCAACAACTGCCTTGCCGACGTTTGAGTTAGGAGCTTCAAAGATATTCACTgctaaaaaatttcaagttgtCAAAAAGGCGATAGAGGGTGTTGCTGCGTTATCAGTCACTGAACGGAGTGAAAATGAAGACAATGTCGTTTTCAAGGTTAATGTATATCGCAACAAAGATATAGCTTTTTTTGTTCATCTTGACAAGTTGAACACTAAATTTTTATGTGATTGTAGACGTTTTGAACGTAGAGGACTGCCATGTTCCCACATTATTTGTGCCATGAAGTACGAGGACATGGATATGTTTCCTGAGAGTCTAATTTGCAAGAGATGGACAAAAACTGCGAAGAGTGATCATATCTCATCAGTTGCCTCCCAAGAAAGTAACGATGAAAAAATGTCAATGTTCCGTCGAGGAGCACTTGCCGCTGCATTCAACAGTCTATGTGATGTTTCGTGTAAGAGCGCAAGTGATTATAAGGAGGCTTTGGAAGGGATTTATAATTTGTGCAATAAGATAAATAAGGATCGTGAGGGAAACGGACACGACAAGCATAAGGCCAAGAAATATGTTGCGCGTGATCCGCTTATGGTGAAGTTTAAAGGTGCCCCTAGGAGGGGAAAATCGAAGCCGACAAGAAAATGTACTCAATGTGGAAAGCGTGGCCACAACACGCGGAGCTGTCCAACACTTGGTGGAACCGGTGTCgtatttgaagatgaagatggagaCGCTTCGCGTGCTGAATATGAGGGAGACGCTTCACGTGCTGAATCTGACAANNNNNNNNGGAATCAAAAAGTTTAA 2445 0.353 MSTYSEATVHLESDTDEVEINSGNGMSSQQGKENSNDYKCISDLTDDDIRGMEFSTENEATKFYELYAHLHGFAVRKDDMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTENEATKFYELYAHLHGFAVRKDDMQRDRENRIVMRQLLCNKEGTSDGSSRPTMRTGCQAKLRLRYDIVHKKFRVSVFNPTHNHELTPERFVHLIPKYRKLTEADKQVVDGLHSQGVRTCHIVGYLMGQKGGGHEGLGFIRKDLHNYTDHQARVRIAEGDTYATLSYFQGKADGDASFFSEFSFTDDGRLENIFWADATSRFDYECFGDVVAFDATYRKNRYGKPLVIFSGYNHHGETTIFAAALVCDETIKTYKWVLNMFSKAMYGKHPKAVITDGDKSMREAIRVVFPNTRHRLCAWHLHRNAGEHVKNKFFLEEFKSLMYSHYTPEKFEYEWKRVVDSYGVSNNKWVNKTYELKRMWASAYMRDHFLCGVRTTSICEGVNSFIKKYVKHKNNIVDFLHNFERALKDYRHNELLSDFKSFYYHHVPTTALPTFELGASKIFTAKKFQVVKKAIEGVAALSVTERSENEDNVVFKVNVYRNKDIAFFVHLDKLNTKFLCDCRRFERRGLPCSHIICAMKYEDMDMFPESLICKRWTKTAKSDHISSVASQESNDEKMSMFRRGALAAAFNSLCDVSCKSASDYKEALEGIYNLCNKINKDREGNGHDKHKAKKYVARDPLMVKFKGAPRRGKSKPTRKCTQCGKRGHNTRSCPTLGGTGVVFEDEDGDASRAEYEGDASRAESDXXXXNQKV 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03065 814 SUPERFAMILY Retrovirus zinc finger-like domains 749 778 IPR036875 GO:0003676|GO:0008270
Tsu05g03065 814 Coils Coil 122 125 - -
Tsu05g03065 814 ProSiteProfiles Zinc finger CCHC-type profile. 759 775 IPR001878 GO:0003676|GO:0008270
Tsu05g03065 814 Coils Coil 793 806 - -
Tsu05g03065 814 Coils Coil 811 813 - -
Tsu05g03065 814 PANTHER OS03G0181600 PROTEIN 122 713 - -
Tsu05g03065 814 SMART 26again6 619 646 IPR006564 GO:0008270
Tsu05g03065 814 Pfam MULE transposase domain 331 425 IPR018289 -
Tsu05g03065 814 Pfam FAR1 DNA-binding domain 128 208 IPR004330 -
Tsu05g03065 814 MobiDBLite consensus disorder prediction 18 38 - -
Tsu05g03065 814 Coils Coil 77 81 - -
Tsu05g03065 814 MobiDBLite consensus disorder prediction 775 814 - -
Tsu05g03065 814 MobiDBLite consensus disorder prediction 786 802 - -
Tsu05g03065 814 ProSiteProfiles Zinc finger SWIM-type profile. 608 644 IPR007527 GO:0008270
Tsu05g03065 814 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 122 713 IPR031052 GO:0006355
Tsu05g03065 814 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03065 Tsu-Chr5 41299823 41302267 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu05g03065 MULE 4.6e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03065 - - ccaj:109792835 652.514