Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03063 ATGGAGCATGAACAAGGAAGCTTTGAAAGCTTCTTAACATGGACATCATCACACTTAGGAATATCAGATTCAACAACTACCAATCATTCTCAACACTCTTTGGCTCATTCTTTATGCGTTTCTATCTTTCCTCACTCTGGCGGTAGAGGTTTAGGTGCTGTGAGAGATCTTAAGAAGGGAGAACTTATTCTAAAAGTTCCAAAATCTGCTTTATTGACTAGTGAGAGTATTATGCAAGAAGATAAAAAGCTTTGTCTTGCTGTTAATAGACACTCTTCTCTTTCCTCAGTTCAGATATTGACAGTTTGCTTGTTATACGAAGTCGGTAAAGGAAAAACTTCAAGGTGGCATCCTTACCTCGTGCATTTGCCTCAAAGTTACGACCTACTAGCCATGTTTGGTGAATTTGAGAAACAAGCTCTGCAAGTGGATGAAGCAATGTGGGTGACAGAAAAAGCTGTACAAAAAGCTAAATCAGAATGGAAAGAAGCTCTTGCCTTGATGGAAGATCTCATATTTAAGCCTCAACTTCTAACATTTAAGGCTTGGGTTTGGGCTGCTGCGACGATATCTTCCCGGACATTGCATATACCATGGGATGAAGCTGGTTGTTTATGCCCTATTGGTGATTTGTTTAATTATGACGCATCTGGAGAGGAGCTATCTGGTATTGAGAATGTAACTGCCTTATCAAATGGAGACAAGAGTATAGTCGTAGACGAAGATCAGATTGATTTTTATTCTCAGAGATTAACTGATGGTGGGTTTGAGGAAGATTCTAATGCATATTGCTTTTATGCTAGGACAAATTACAAGAAAGGCGATCAGGTTCTATTATGCTATGGAACATACACAAATTTGGAGCTTCTTGAACACTATGGATTTCTCTTACAAGAAAATCCAAATGACAAAATTTTCATCCCTTTGGAACCTGCTATGTACACTTCTACTTCATGGTCTAAGGAATCACTCTATATCCATCATGACGGGAAGCCTTCGTTTGCGCTACTAGCTGCATTACGATTGTGGGCAACCCCTCATAATAAGAGGAGGTCTGTCGGACATCTTGCATATTCCGGTTCTCAACTGTCTGCCGACAATGAAATTATCATTATGAAATGGTTGTTGAAAACTTGTGACGCTGTCTTAAAGAGTATGCCAACATCAATTGAAGACGATAACTTACTCATGAATGCATTGGATAGTACTATTAGTCAAGACTTCATAACTTTCATGAAGATTGCAAAACTTATGTCTTCTAGGGATGAAATTTATACTTTCTTAGAAGCTCATAATATAACGGACGCGCTTAGTTTTAGTGAgatgattttatcaaaaaaagtgAGAAGTTCAATGGAGAGATGGAAATTAGCTGTCCTATGGAGGCTAAGGTATAAGAAAGTCCTTGTTGATTGCATCTCTTATTGCAATAGAGTACTAGATTCTTTCATGAGATAA 1458 0.3779 MEHEQGSFESFLTWTSSHLGISDSTTTNHSQHSLAHSLCVSIFPHSGGRGLGAVRDLKKGELILKVPKSALLTSESIMQEDKKLCLAVNRHSSLSSVQILTVCLLYEVGKGKTSRWHPYLVHLPQSYDLLAMFGEFEKQALQVDEAMWVTEKAVQKAKSEWKEALALMEDLIFKPQLLTFKAWVWAAATISSRTLHIPWDEAGCLCPIGDLFNYDASGEELSGIENVTALSNGDKSIVVDEDQIDFYSQRLTDGGFEEDSNAYCFYARTNYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKIFIPLEPAMYTSTSWSKESLYIHHDGKPSFALLAALRLWATPHNKRRSVGHLAYSGSQLSADNEIIIMKWLLKTCDAVLKSMPTSIEDDNLLMNALDSTISQDFITFMKIAKLMSSRDEIYTFLEAHNITDALSFSEMILSKKVRSSMERWKLAVLWRLRYKKVLVDCISYCNRVLDSFMR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03063 485 Pfam SET domain 48 282 IPR001214 GO:0005515
Tsu05g03063 485 Gene3D set domain protein methyltransferase, domain 1 5 296 - -
Tsu05g03063 485 Gene3D - 309 484 IPR036464 -
Tsu05g03063 485 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 470 - -
Tsu05g03063 485 SUPERFAMILY SET domain 36 300 IPR046341 -
Tsu05g03063 485 CDD SET_LSMT 47 296 - -
Tsu05g03063 485 Pfam Rubisco LSMT substrate-binding 330 469 IPR015353 -
Tsu05g03063 485 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 292 403 IPR036464 -
Tsu05g03063 485 ProSiteProfiles SET domain profile. 36 282 IPR001214 GO:0005515
Tsu05g03063 485 PANTHER PROTEIN SET DOMAIN GROUP 40 4 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03063 Tsu-Chr5 41278255 41283260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03063 48 324 NAC Transcription Factor Family AT3G56570 22.985 1.02e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu05g03063 SET 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03063 - - gmx:100787452 760.37