Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03053 ATGAAATCCTCCATGTTGCTTGATTTAGAGCGGCTGGAGGAGAGTGATTGTTGGAGTTTATTTGTGAAATTTGCATTTCATAACATAAATGTGAGTGATTATCCAATTCTTGAATCAATTGGCAAGAATATTGTAGTCAAGTGTGGAGGGTTGCCATTAGCGGTAAAAACATTGGGGAACCTCTTGCGAAGAAAATTATCTCAAAGTGAATGGGTTAAGATATTGGAGACTGATTTGTGGTGTTTATCAGAGAGTGACAGTAAAATAAATCCAGTATTGAGATTGAGTTACCATAATCTTCCTTCCAATCTGAAGCGTTGTTTTGCTTATTGCTCCATATTTCCCAAGGGTTATGAGTTTAAGAAGAGCACATTAATCAATCTTTGGATGGCAGAAGGTTTGCTGAAGTGTTGCAGAGGAGACAAAAGTGAAGAAGATTTGGCTAATGAATTATTCAATGATCTAGAGtcaatttcatttttccagCAATCACCACATCTTAAGCATAATAAGAGTTTTGTCATTCATGATCTTGTCAATGATTTGGCGAAATCAGAGTGCCTAAAATTTTCCTTACAAATTGAGGGTGATAAGGTGCAAGATATATGTGAAAAGACACGTTACATTTGGTGCTCTCTTGATTTGAAAGACGATGCTAGAATATCACATCAAATTTGTAAGATTAAAGGATTACGCAACCTGTTGGTAGAACGCATCATGATAAGCAACAACTTGCAACgtgatatattttcaaaaataaaatatttgcgGATGTTGTCATTTCGTGGTTGTGAACTCACAAAGCTAGCAGATAAGATAGGCAATTTAAAGCTTTTGCGTTATCTAGACCTAACAAGAACAAGGATTAAAAGCTTGCCTTATTCTATTTGTGAGCTCTATAATTTAGAGACTCTAATATTGGAAGATTGTTCTAAATTGACTGAACTTCCTTTAGATTTTTACAAACTTGTTTGTTTACGTCATCTTTATCTGGAAGGAACTAATATAAAGAAGATGCCAAAGAAGATAGGGAGGCTAAACCATGTTCAAACGCTGAGTCATTTTGTTGTGGGAGAGAGGCGTGAGTTTGATATTAAGGAGTTGGATAATCTCAATCTTCTTCAAGGAAAACTTTGTATTTCAGGTGACAGTTTCGAAGTCAACAACAATGGAAGAGAATTGGATGTCTTGGAGGCTCTTCAACCAAATAGCAACTTGAGGAGGCTCACCATTGAAAACTACAATGGCAAGTGCTTTCCAAATTGGCTAAGGGGTTGTGCTTTACCCAACTTAGTATCTCTTAAAGTTAAGAGTTGTAAATTATGTTCTCATTTGCCGGCACTTGGTCAGCTTCCTTGTCTCAAGGAGCTTTCCATTTCACATTGTGATGGAATTAAGATCATTGACAAAGAGTTTTACGACAATAGTTCAACAAGTCTTCCTTTCAGGTCCCTtgaagttttaaaatttcagggcaTGGTCAATTGGGAGGAATGGTTATGTTTAGAAGCGTTTCCTTTGCTTAAAGTGCTTTGTATAGAAGATTGTCCCAAATTGAAGAGAGCCCTGCCTCAACACCTTCTCTCTTTACAAAAATTGAAGATTTATGATTGCAAAATGATGGAGGCATTAATTCCCAAGAATGATAGTATCATAAAGTTAGATCTACAGAAATGTGATCGGATTTTGGTAAATGGATTGTCGTGTGGGTTGAAAAAGTTTGTCCTTTTGGAAAATCGGATGGCACTCCTCCTCCTCCTTGCCTTTTTCATTACATCTGTTCACCCATCTTTATTCTCTCAAGTTGAACGATTTCCCACAGTTGGAATCGTTGGGATTCTTGAGAGCTTGCCAGAGGAGGGTCTACCCAGCTCCCTTTCTTATTTGTACATTGATAATTGCCCTAGTCTTGAGAGTTTGCCAAAGGAGAGCTCCCTTTCTTTTTTGAACATTGAGAAATGTCCATTAATAAAGGAGAAGTACCAAAAGGAGGGAGGAGAGCGTTGGCATACAATTAGTCACATCCGTAAGGTGTATATTGACCAACAATCGGAATTCGATACATCCATTCTTTTGGCGGAATTGAGCTGCAGCTTAACTAGGACTAGGCTGTTACAATGA 2121 0.3659 MKSSMLLDLERLEESDCWSLFVKFAFHNINVSDYPILESIGKNIVVKCGGLPLAVKTLGNLLRRKLSQSEWVKILETDLWCLSESDSKINPVLRLSYHNLPSNLKRCFAYCSIFPKGYEFKKSTLINLWMAEGLLKCCRGDKSEEDLANELFNDLESISFFQQSPHLKHNKSFVIHDLVNDLAKSECLKFSLQIEGDKVQDICEKTRYIWCSLDLKDDARISHQICKIKGLRNLLVERIMISNNLQRDIFSKIKYLRMLSFRGCELTKLADKIGNLKLLRYLDLTRTRIKSLPYSICELYNLETLILEDCSKLTELPLDFYKLVCLRHLYLEGTNIKKMPKKIGRLNHVQTLSHFVVGERREFDIKELDNLNLLQGKLCISGDSFEVNNNGRELDVLEALQPNSNLRRLTIENYNGKCFPNWLRGCALPNLVSLKVKSCKLCSHLPALGQLPCLKELSISHCDGIKIIDKEFYDNSSTSLPFRSLEVLKFQGMVNWEEWLCLEAFPLLKVLCIEDCPKLKRALPQHLLSLQKLKIYDCKMMEALIPKNDSIIKLDLQKCDRILVNGLSCGLKKFVLLENRMALLLLLAFFITSVHPSLFSQVERFPTVGIVGILESLPEEGLPSSLSYLYIDNCPSLESLPKESSLSFLNIEKCPLIKEKYQKEGGERWHTISHIRKVYIDQQSEFDTSILLAELSCSLTRTRLLQ 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03053 706 PRINTS Disease resistance protein signature 48 62 - -
Tsu05g03053 706 PRINTS Disease resistance protein signature 297 313 - -
Tsu05g03053 706 SUPERFAMILY L domain-like 175 659 - -
Tsu05g03053 706 Pfam NB-ARC domain 6 77 IPR002182 GO:0043531
Tsu05g03053 706 PANTHER DISEASE RESISTANCE PROTEIN RP 6 642 IPR044974 GO:0006952
Tsu05g03053 706 Gene3D - 97 187 IPR036388 -
Tsu05g03053 706 Gene3D Ribonuclease Inhibitor 210 564 IPR032675 -
Tsu05g03053 706 PANTHER OS05G0414200 PROTEIN 6 642 - -
Tsu05g03053 706 Gene3D - 11 96 IPR042197 -
Tsu05g03053 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 111 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03053 Tsu-Chr5 41079680 41083365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03053 256 372 WRKY Transcription Factor Family AT4G12020 35.593 2.86e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03053 - - mtr:MTR_7g021000 709.523