LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g03035	ATGTCTAAACCGCAAATAAGAACAACAATGAAACAAGTTCATCATGTTGCTCAACAAAGCTCAAAGGAAACAACTTCAACAAAGAAGCAAGTTGTTCATCAATCTTCTGGACAAAGCTCAAAGGGAAAATCAACAGTTTCAAAAGATCCCATATCTGAACCAAGCTCAAAGGAATTAGTTGCAAATGCTACAAAGATTCAACTTGAAGCACCTAGCTCAATTGAAATAGTTGCAACTGCAACAAACAATGAAGTTGATGAACACAGGTCAATGGAAATTGTTGCAAGTCCAACAAATAATAAAGTTAGTGAACCAAGGACAATGCAAAGACAGCCAACTATGCTGAAAGAAGTTCACAATGGCAAAGAACTTTGGAAGATTGCTATTAAGGTCAAGGATAGATGGAATTGGGACAAGGAGGGGAAAAAAAGCTTTCAGCTTTTGGTTGTTGACTCAAAGGGAGATTCCGTTGTAGTCATTGTTCCACATGATCTACATTCAGATTTCGATTCAAAAATCATTGTGAATAACACATACACATTCCAAAATTTCCAAGTTCTCAATAATGATGACCAATTTAAGCTATCAGATCACAAATATAAATTGAGGTTGAGTGGAGGTACTAGGGTTTTGGATGTTAATAAACATGACATTCCATATCCAATGCCTAAGTTTAAAGACTTTGTTGAGATTACAATGGGAAAATTCCGTGAAGATTTACTATATGATGTTATTGGAGTATTAGATGATATTGGTTTTACACAAGCAGTTCAAGGTAGTAGAAAAGCTCAAGTTAATTTCCATCTTAAAGACCTTAGTGGCAATCAGATCCTGTGCACACTATGGGAACATTATGCTTTGCAATTCATCGCTTACACTAGAGAAAACAATGTTTCTGGTCCAACAATTGTTTGTATGAAATATGTGAAGATTAAGCTAGAAGGACGATATCCATTAGCTGTTTCAAACACTTGGACTGATACAAGAATAGCAGATGCCGTATCAAGTGGAACCATGGCTGACATTGTTCAAACACCTTCTCAACTCATGAGTCAATCAACTGGCGGCTCAACTTACACTCCTGAACAGAAAATCCTTAACAAAGCTGAAATAATGTCACTATCTCAAATTATGTCTCTTTCTCAAGAAACAGTATGTGCTACTGTTGTCAAAACTGCTCGAGTTCGTTTTAATCCCAAGGGATGGTATTATCAAGGTTGCTATAAGTGTCCTAAGACTACATTCGGTGACAAACCACCTTATAAGTGTGATCAAAATCATCAAACTGAGACTCAGATATGGAAGTATAgaattgatgttgatgttgaataTGGTAATTGtgaagcaacttttacattctGGGACCGTGAATGCGAACAACTCATCGGCGAGTCTGCAGCTTCTCTTCGTGATCAAATGCTTGAGATTGGCATAGATGACCCATGCGATTATCCTACCACCATTGACACTATCGAAGGTCGTACTTTGGCAATCAAGGTTAAGTGGCAGCCAAAATGGTCAAATGGATCTGTTCAAGGAGTTCATGAAGGGAAATCTTTCATTGAAGGACTCAAAGCTCAATTCACACCTACTCAAgaTCCCAAATTACTCGAACAAGCTTCCTCTCCTTTGCCTGAGGATGTTACTTCTTCCCAAGCTGTTGAATCAAACTCTGATACTGACTATGTTATTCAAACGGTCTCTTTGTCCGATGATACTGATCAATTTGATCCAAGTTTATTGGCAATGAACACACCTTCAAAAAGAAGTGGAGCTGATATTAAAGATGAAAATGTTGAAGCTGGAGAATTGATTGGTTCTAAGATGTCTTCCACTAAAATGCCAAAGCAAGCCAAGATGGAGTAA	1866	0.3682	MSKPQIRTTMKQVHHVAQQSSKETTSTKKQVVHQSSGQSSKGKSTVSKDPISEPSSKELVANATKIQLEAPSSIEIVATATNNEVDEHRSMEIVASPTNNKVSEPRTMQRQPTMLKEVHNGKELWKIAIKVKDRWNWDKEGKKSFQLLVVDSKGDSVVVIVPHDLHSDFDSKIIVNNTYTFQNFQVLNNDDQFKLSDHKYKLRLSGGTRVLDVNKHDIPYPMPKFKDFVEITMGKFREDLLYDVIGVLDDIGFTQAVQGSRKAQVNFHLKDLSGNQILCTLWEHYALQFIAYTRENNVSGPTIVCMKYVKIKLEGRYPLAVSNTWTDTRIADAVSSGTMADIVQTPSQLMSQSTGGSTYTPEQKILNKAEIMSLSQIMSLSQETVCATVVKTARVRFNPKGWYYQGCYKCPKTTFGDKPPYKCDQNHQTETQIWKYRIDVDVEYGNCEATFTFWDRECEQLIGESAASLRDQMLEIGIDDPCDYPTTIDTIEGRTLAIKVKWQPKWSNGSVQGVHEGKSFIEGLKAQFTPTQDPKLLEQASSPLPEDVTSSQAVESNSDTDYVIQTVSLSDDTDQFDPSLLAMNTPSKRSGADIKDENVEAGELIGSKMSSTKMPKQAKME	621

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu05g03035	621	MobiDBLite	consensus disorder prediction	87	110	-	-
	Tsu05g03035	621	MobiDBLite	consensus disorder prediction	583	621	-	-
	Tsu05g03035	621	PANTHER	REPLICATION FACTOR A 1, RFA1	145	467	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Tsu05g03035	621	MobiDBLite	consensus disorder prediction	537	560	-	-
	Tsu05g03035	621	MobiDBLite	consensus disorder prediction	93	110	-	-
	Tsu05g03035	621	Gene3D	-	110	211	IPR012340	-
	Tsu05g03035	621	MobiDBLite	consensus disorder prediction	1	56	-	-
	Tsu05g03035	621	CDD	RPA1_DBD_B_like	243	330	-	-
	Tsu05g03035	621	SUPERFAMILY	Nucleic acid-binding proteins	370	510	IPR012340	-
	Tsu05g03035	621	SUPERFAMILY	Nucleic acid-binding proteins	113	210	IPR012340	-
	Tsu05g03035	621	CDD	RPA1_DBD_A_like	126	210	-	-
	Tsu05g03035	621	Gene3D	-	350	525	IPR012340	-
	Tsu05g03035	621	SUPERFAMILY	Nucleic acid-binding proteins	236	322	IPR012340	-
	Tsu05g03035	621	PANTHER	RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED	145	467	-	-
	Tsu05g03035	621	Gene3D	-	216	333	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu05g03035	Tsu-Chr5	40876445	40886591	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g03035	12	286	Core DNA Replication Machinery Family	AT5G45400	21.262	1.70e-07	52.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g03035	-		-	mtr:MTR_2g450060	386.341