Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03031 aTGCTTGCCGCTGCTTCCAGGCACGCCAGACCCACCGCTGGCAGCGGCAATCGTATCCGGTCACTTCTAACTGCCTCCGGCATAACCACCGGTTACTCAATTTCCACCACAAACGGTTACCGTTACGGTTACAGTTACGGTCACAGAATCAGTTACAGTAACCGCCACACCAGAACATGTCCAAGCTCACTTTTCTCTATCAAAAGCTTTCtctctgattcttcatcatcatcaccgtcTGGCAGAGTAACCAATCCATTCATACCATTACCTAATTCGAAGGTAGATGGAAAAGCATTGTTTTCAACTTCAGCTAAAACTGATGATGATGGAAATCAGAAGAACCAAAAAAGTTCTACTACTGTTGCTAAGTCGTCTCCAGGTGGTGGACAAATTGCTGATATAAAGATCCTAAAATCACTTGCAAGTTACATTTGGATGAAAGATAATCTCGAATTTCAGTTTCGGGTTGTTGCTGCATTGTTTTTACTTGTCGGAGCTAAGGTTGTGAATGTTCAGGTCCCTTTCTTATTCAAACTTGCAGTTGATTGGTTAAATACTGCCACAGGCACTGCTGGTGTTGTTGCTTCAAATCCTACTGTGATGGCCCTTTTTGCTACCCCCGTGGCAGTGTTGATCGGATATGGGATTGCACGTTCTGGAGCTTCTGCTTTCAATGAACTGCGGACTGCTTTGTTTTCCAAGGTAGCATTGCGAACAATTCGTTTAGTTTCAAGGAAGGTCTTTTCACATTTGCACGACCTTGACCTTCAATATCATCTAAGtcGAGAAACTGGTGGATTAAGTCGAATAATTGACCGTGGTAGCCGTGCAATAAATTTCATTCTCTCCGCTATGGTGTTCAATGTAGTACCCACTGTATTAGAGATATCTATGGTATCAGGTATACTGGCCTACAAATTTGGAGCACCTTTTGCATGGATTACTTCCCTGTCAGTTGCTGCTTATGTAGTTTTCACACTTTCTATCACACAGTGGAGGACTAAATTCAGGAAAGCCATGAATAAGGCTGATAATGACGCTAGTACTAGGCAAATTGATTCACTTATTAATTATGAGACTGTCAAATATTTCAATAATGAAGGTTATGAAACCGATCATTATGACAAGTACCTAAAGAGGTATGAGGATGCTGCTCTGAAAACCCAACACAGTCTTGCTTTGTTGAACTTTGGTCAAAATGCTATATTTAGTGCTGCTCTTTCTACAGCAATGGTTCTATGTTCTCATGGAATAATGAATGGCACAATGACCGTTGGTGATTTGGTGATGGTAAATGGGCTCCTCTTCCAACTATCTCTTCCACTCAATTTCCTTGGCAGTGTTTATCGTGAAACTATACAAAGTCTAATTGACATGAAATCCATGTTCCAATTACTTGAGGAAAAAGCAGACATTAGGGATAAAGAAAATGCAAAGCCTCTAAGATTTAATGGGGGGAGGATCCAATTTGAGAATGTACATTTTAGTTACCTCACAGAGAGAAAGATACTAGATGGAATATCACTACTTGTGCCAGCTGGTAAAAGTGTTGCAATTGTCGGGACTAGTGGAAGTGGAAAATCAACCATTCTCAGAATGCTATTTAGATTTTTTGATCCCCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGACGTAACCCTTGAGAGTTTACGGAAGTCTATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACTATATTTCATAACATTCACTATGGTCGGCTTTCATCAACAGAAGAGGAGGTCTACGAAGCTGCTCGGAAAGCAGCAATCCATGACACTATCATGAGTTTTCCTGAGAAATACTCCACTGTTGTGGGAGAGCGAGGGCTAAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTGGCTCGAGCATTCTTAAAAGCACCTGCAATACTGTTGTGTGATGAAGCTACAAGTGCTCTAGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTGAAGTCACTATCAACTAATCGAACATCCATATTCATTGCTCACAGGCTCACCACTGCAATGCAGTGTGATGAGATCATTGTTTTGGAAAATGGAAAGGTGGTTGAGCATGGACCACATGAAGTGCTCTTAGCAAATGCAGGAAGATATGCACAGCTTTGGGGACAACAAAATAACACTATTGACGCAATTGACACAGCCATCAAACTGGGAGCATAA 2220 0.4077 MLAAASRHARPTAGSGNRIRSLLTASGITTGYSISTTNGYRYGYSYGHRISYSNRHTRTCPSSLFSIKSFLSDSSSSSPSGRVTNPFIPLPNSKVDGKALFSTSAKTDDDGNQKNQKSSTTVAKSSPGGGQIADIKILKSLASYIWMKDNLEFQFRVVAALFLLVGAKVVNVQVPFLFKLAVDWLNTATGTAGVVASNPTVMALFATPVAVLIGYGIARSGASAFNELRTALFSKVALRTIRLVSRKVFSHLHDLDLQYHLSRETGGLSRIIDRGSRAINFILSAMVFNVVPTVLEISMVSGILAYKFGAPFAWITSLSVAAYVVFTLSITQWRTKFRKAMNKADNDASTRQIDSLINYETVKYFNNEGYETDHYDKYLKRYEDAALKTQHSLALLNFGQNAIFSAALSTAMVLCSHGIMNGTMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLIDMKSMFQLLEEKADIRDKENAKPLRFNGGRIQFENVHFSYLTERKILDGISLLVPAGKSVAIVGTSGSGKSTILRMLFRFFDPHSGSIKIDDQDIRDVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSSTEEEVYEAARKAAIHDTIMSFPEKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSLSTNRTSIFIAHRLTTAMQCDEIIVLENGKVVEHGPHEVLLANAGRYAQLWGQQNNTIDAIDTAIKLGA 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03031 739 MobiDBLite consensus disorder prediction 103 128 - -
Tsu05g03031 739 SMART AAA_5 514 700 IPR003593 -
Tsu05g03031 739 Gene3D - 480 734 IPR027417 -
Tsu05g03031 739 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 60 729 IPR039421 -
Tsu05g03031 739 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 158 455 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu05g03031 739 Gene3D ABC transporter type 1, transmembrane domain 144 479 IPR036640 GO:0005524|GO:0016021
Tsu05g03031 739 ProSitePatterns ABC transporters family signature. 626 640 IPR017871 GO:0005524
Tsu05g03031 739 CDD ABCC_ATM1_transporter 489 724 - -
Tsu05g03031 739 Pfam ABC transporter transmembrane region 158 442 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu05g03031 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 724 IPR027417 -
Tsu05g03031 739 MobiDBLite consensus disorder prediction 103 127 - -
Tsu05g03031 739 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 489 723 IPR003439 GO:0005524
Tsu05g03031 739 Pfam ABC transporter 505 654 IPR003439 GO:0005524
Tsu05g03031 739 PANTHER BNAA10G12020D PROTEIN 60 729 - -
Tsu05g03031 739 CDD ABC_6TM_ATM1_ABCB7 160 463 - -
Tsu05g03031 739 SUPERFAMILY ABC transporter transmembrane region 153 472 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03031 Tsu-Chr5 40828679 40840769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03031 325 725 Calmodulin-binding Proteins AT2G36910 35.680 1.40e-64 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03031 K05662 - gmx:100787870 1142.49