Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03030 ATGTATCATTCTTTAAAACATCATATGAACAAGTTCAATAATAACATCAAATCAGAGGAATGGACATGGGATGAAGGTAAAGGCTTTGAGGAAAACCTCCTCTTAGAACATCCGAAGGAGGGCCAATGGGACAAACCGGTTGTTTCTGCGCGATTTATGGTAGAAGTAAAACATCATACTCATATGATAAAGGAATGTCGCTTCGAGTTGTTAACATGCTCGGATAATTGTAATACAAGAGAGAATGCTTTGATCCGTGAAAACAAAGCTCCTCCATTTAAGAATAAGACCAATAAAGTGCTTCATTGGAAGGAAGAAGAACACGTattattTTTGGAGGGACTCGAGAAGTATGGTAAGGGAAATTGGAAAGCGATTTCAAATCACGTTGGCACAAAATCTTATACTCAAGTTGCTAGCCATGTTCAAAAGCATTTCATTCGAGTAAATCAAGAAAGTGTTGATTCATCAAAAAAGAGTAAAAGAAGAAGCAAATTTGACACTACCTCATGGAATGGAGATTTCCACCCTCTTCTATATAGGGAATACATTCCACCTCCTCCTCCTTCTCCAAATGTTGAAACACAACCAATTTTAGAGTACTTACTACAACAATTCCAACAATATTCCCAAGAAGAATTACTGTAG 648 0.3688 MYHSLKHHMNKFNNNIKSEEWTWDEGKGFEENLLLEHPKEGQWDKPVVSARFMVEVKHHTHMIKECRFELLTCSDNCNTRENALIRENKAPPFKNKTNKVLHWKEEEHVLFLEGLEKYGKGNWKAISNHVGTKSYTQVASHVQKHFIRVNQESVDSSKKSKRRSKFDTTSWNGDFHPLLYREYIPPPPPSPNVETQPILEYLLQQFQQYSQEELL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03030 215 CDD SANT 103 146 IPR001005 -
Tsu05g03030 215 ProSiteProfiles Myb-like domain profile. 103 146 IPR001005 -
Tsu05g03030 215 PANTHER TRANSCRIPTION FACTOR KUA1 19 175 - -
Tsu05g03030 215 SUPERFAMILY Homeodomain-like 97 150 IPR009057 -
Tsu05g03030 215 Pfam Myb-like DNA-binding domain 103 145 IPR001005 -
Tsu05g03030 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 150 IPR017930 -
Tsu05g03030 215 Gene3D - 101 151 - -
Tsu05g03030 215 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 99 148 IPR006447 GO:0003677
Tsu05g03030 215 ProSiteProfiles SANT domain profile. 103 150 IPR017884 -
Tsu05g03030 215 PANTHER TRANSCRIPTION FACTOR SRM1 19 175 - -
Tsu05g03030 215 SMART sant 99 148 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03030 Tsu-Chr5 40699398 40759418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03030 103 148 EF-hand Containing Proteins AT3G07740 36.957 2.56e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu05g03030 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03030 - - mtr:MTR_1g083180 140.584