Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03020 ATGGCAGAAGTTACATTGAATTCAATTGTCAATAACCTATACCTTACAGTTAAAAAAGTCTCCATGAAGTTCTACATACCTCCGTTgcaatctttcttttttatcattgttATTCTTTTTCCTCTAGTTACTGCTGACCTGAATTCCGATAAGCAAGCCCTTCTTGATTTTGTTTCTTCCGTCCCTCATCGTCGCAACCTTAAATGGGACTTAGCTACCTCCATATGTACATCTTGGATAGGCATAACTTGTAATCCAAACCAAACTCGTGTTGTTTCTGTCCGGCTCCCTGGAGTCGGATTAGTAGGCACCATTCCAGCCAATACACTCGGTAAAATTGACTCACTCAAAACTATAAGCCTTCGCTCGAACCTACTTAGTGGAAGTCTACCTCCTGATGTTACGTCTCTTCCATCTCTACAATATCTCTTCCTTCAACATAATAATCTTTCTGGTGAATTGCCAACCTCATTGTCACCGCAACTCAATGCACTTGTTTTGTCATACAATTCATTCAAAGGTAGAATTCCTAAGACATTGCTAAACTTAACACAGTTAACTCGATTGAGCCTCGAGAACAACTCATTATCTGGACCGATACCTGATTTTcatgtcaacctcaaacatttGAATTTAAGCTACAACCATTTGAATGGCTCTATCCCTCCATCTCTTCATAATTTCTCAAGTTCTTCCTTTGAAGGAAACTCCCTTTTATGTGGATTACCTCTAAAGCCGTGCTCCGGAGTCCCTCCTTCATCGGCTCCTCCTGCACTGGCTCCTATAAAACACGGCTCAAAACATAAACTGAGTAAAGGAGCTATCATTGCAATTGCTGTTGGTGGAGCTGTTCTGTTGTTTTTCATAGTACTTGTTGTTGTTCTTTGTTGTTTAAAGAAAAAGGATAACGGAACCTCAAGAGTAGTTAAAGCGAAGGGTCCtattggtggtggtggtggtggaaggACTGAAAAGCCGAAAGAAGAGTTTGGAAGTGGAGTTCAAGAATCTGAGAAAAACAAATTGGTTTTCTTTGAGGGCTGCTCTTATAACTTTGATCTTGAGGATTTGTTGAGGGCTTCTGCCGAAGTTCTCGGAAAGGGTAGTTATGGTACCGCATATAAGGCTATTTTAGAAGAGTTAACGACAGTTGTAGTGAAAAGGTTGAAAGAAGTTGTGGTAGGCAAGAGGGAATTTGAACAGCAGATGGAGATTATAGGTAGCATTGGAAGTCACCCGAATGTCGTTCCGCTTCGTGCTTATTATTACTCGAAGGATGAGAAGCTTTTGGTTTGTGACTATTACCCAAATGGCAATCTATCTATACTCTTGCATGGTACTAGGACAGGCGGAAGAACAACTTTAGATTGGAACACGCGAGTAAAAATCACTCTCGGAATTGCCCGAGGAATTGCCCATTTACATTCAGTTGGTGGTCCAAAATTCGCACATGGAAATGTGAAATCCTCCAATGTCCTCCTAAGTCAAGATAACGATGGCTGCATTTCCGATTTTGGCCTGACTCCACTCATGAACGTGCCGTCAACCCCTTCTAGAGCTGTAGGCTACCGTGCTCCTGAGGTAATTGAAACTCGGAAGCACACTCATAAATCAGATGTATACAGTTTTGGCGTCCTCCTTTTGGAAATGCTTACAGGTAAAGCACCACAACAGTCTCCCGTACGCGATGACATGGTTGATCTGCCTAGATGGGTTCAGTCTGTTGTTAGGGAGGAGTGGACAGCCGAGGTTTTCGATGTGGAGCTAATGAGGTACCAAAAtattgaagaagaaatggtgCAAATGTTACAAATTGGCATGGCTTGTGTCGCAAAGGTTCCGGATACGAGGCCTAACATGGAGGAAGTAGTTAGACTGATTGAAGAAATTCGGCAATCTGACTCGGATAACCGACCATCTTCTGACGATAATAAATCCAAGGATTTAACTGTTCAAACTCCATGA 1965 0.4036 MAEVTLNSIVNNLYLTVKKVSMKFYIPPLQSFFFIIVILFPLVTADLNSDKQALLDFVSSVPHRRNLKWDLATSICTSWIGITCNPNQTRVVSVRLPGVGLVGTIPANTLGKIDSLKTISLRSNLLSGSLPPDVTSLPSLQYLFLQHNNLSGELPTSLSPQLNALVLSYNSFKGRIPKTLLNLTQLTRLSLENNSLSGPIPDFHVNLKHLNLSYNHLNGSIPPSLHNFSSSSFEGNSLLCGLPLKPCSGVPPSSAPPALAPIKHGSKHKLSKGAIIAIAVGGAVLLFFIVLVVVLCCLKKKDNGTSRVVKAKGPIGGGGGGRTEKPKEEFGSGVQESEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEELTTVVVKRLKEVVVGKREFEQQMEIIGSIGSHPNVVPLRAYYYSKDEKLLVCDYYPNGNLSILLHGTRTGGRTTLDWNTRVKITLGIARGIAHLHSVGGPKFAHGNVKSSNVLLSQDNDGCISDFGLTPLMNVPSTPSRAVGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPVRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMACVAKVPDTRPNMEEVVRLIEEIRQSDSDNRPSSDDNKSKDLTVQTP 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03020 654 SUPERFAMILY L domain-like 52 247 - -
Tsu05g03020 654 Pfam Protein kinase domain 362 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03020 654 MobiDBLite consensus disorder prediction 629 645 - -
Tsu05g03020 654 Gene3D Phosphorylase Kinase; domain 1 327 434 - -
Tsu05g03020 654 Gene3D Transferase(Phosphotransferase) domain 1 435 653 - -
Tsu05g03020 654 ProSiteProfiles Protein kinase domain profile. 359 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03020 654 Gene3D Ribonuclease Inhibitor 47 205 IPR032675 -
Tsu05g03020 654 ProSitePatterns Protein kinases ATP-binding region signature. 365 396 IPR017441 GO:0005524
Tsu05g03020 654 MobiDBLite consensus disorder prediction 629 654 - -
Tsu05g03020 654 PANTHER LRR RECEPTOR-LIKE KINASE 15 654 - -
Tsu05g03020 654 PANTHER OS05G0588300 PROTEIN 15 654 - -
Tsu05g03020 654 SUPERFAMILY Protein kinase-like (PK-like) 363 636 IPR011009 -
Tsu05g03020 654 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Tsu05g03020 654 Gene3D Ribonuclease Inhibitor 207 248 IPR032675 -
Tsu05g03020 654 ProSiteProfiles Leucine-rich repeat profile. 206 228 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03020 Tsu-Chr5 40612939 40615342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03020 29 652 Receptor kinase-like Gene Family AT5G58300 68.189 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu05g03020 Pkinase 3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03020 - - gmx:100818344 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03020 05 40612939 40615342 Tsu05g03020 05 40612939 40615342 ECH
Tsu03g00738 03 6576020 6580650 Tsu05g03020 05 40612939 40615342 PCT