Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03018 ATGTCTCTACAGAAGCTCAAGCAACTGAAGCTTGTAACAGCAAGATCAGATTTTGAAGATGACCCATCAAtcaagagaaagagaaaaccCAAAAGAAAGCTTCTTCGTATCATAATAACCGACCATGATGCTACTGATTCTGATTCCTCCgatgaagagagagaaaaaaataaccaaaacagaACAGAGAGAAAGGGGAAGAGAGAAATCTTTGAAATTACCATGCACCCTCCCGTACTGGATTcttctttctcattttcttcTCGTTCATCTTGTTCATCGGAGAAAACCCACAAAAAGCGCAACAGCCTCAAGAAAACACCACCAACCTCCGCCGTCACGCTCCCCTACAACAAGTACCGAGGCGTAAGACAGCGGCCGTGGGGAAAATGGGCTGCTGAGATCCGTGACCCGATCCGCCGGAAACGTATCTGGCTTGGAACGTTCACAACGGCGGAGCAAGCCGCCGCTGAGTACGACAGAGTAGCGGTGATATTGCATGGTCCTAACGCCGTTACCAACTTTCCGATTACTCCGGCGGAAGCAGAAACTGAAGTACCGCCGCCGGAAAACAACGCCGGTGGGTGTAACATCGGAGCTGGTTACTCCGACGCTTTGGCTTCTCCGACGTCTGTTTTAACTTACTGTGACTCGACGCCGTTTGACGGTTTCCGTTACGGTGACGTCGATGCTTTTGGGTTTAACATCGACGCGCCGTTAAGTTTGCCGGAAGTTAACGTTCCGCTGACGTGTCAccagaaattggaaaaagaAGAAGCGTTTGAAGAGTTTGATCTTGACGAGTTTATGACGTGGCCGTACTGA 825 0.4497 MSLQKLKQLKLVTARSDFEDDPSIKRKRKPKRKLLRIIITDHDATDSDSSDEEREKNNQNRTERKGKREIFEITMHPPVLDSSFSFSSRSSCSSEKTHKKRNSLKKTPPTSAVTLPYNKYRGVRQRPWGKWAAEIRDPIRRKRIWLGTFTTAEQAAAEYDRVAVILHGPNAVTNFPITPAEAETEVPPPENNAGGCNIGAGYSDALASPTSVLTYCDSTPFDGFRYGDVDAFGFNIDAPLSLPEVNVPLTCHQKLEKEEAFEEFDLDEFMTWPY 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03018 274 MobiDBLite consensus disorder prediction 15 70 - -
Tsu05g03018 274 MobiDBLite consensus disorder prediction 36 70 - -
Tsu05g03018 274 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 217 - -
Tsu05g03018 274 Gene3D AP2/ERF domain 118 178 IPR036955 GO:0003700|GO:0006355
Tsu05g03018 274 CDD AP2 119 178 IPR001471 GO:0003700|GO:0006355
Tsu05g03018 274 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700|GO:0006355
Tsu05g03018 274 Pfam AP2 domain 119 162 IPR001471 GO:0003700|GO:0006355
Tsu05g03018 274 MobiDBLite consensus disorder prediction 82 113 - -
Tsu05g03018 274 PIRSF PTI6 1 274 IPR017392 GO:0003700
Tsu05g03018 274 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
Tsu05g03018 274 SUPERFAMILY DNA-binding domain 119 177 IPR016177 GO:0003677
Tsu05g03018 274 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 26 217 - -
Tsu05g03018 274 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Tsu05g03018 274 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03018 Tsu-Chr5 40589471 40591166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03018 1 224 AP2-EREBP Transcription Factor Family AT4G27950 40.517 2.67e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g03018 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03018 K13434 - gmx:100800489 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03018 05 40589471 40591166 Tsu05g03018 05 40589471 40591166 ECH
Tsu03g00741 03 6601500 6602655 Tsu05g03018 05 40589471 40591166 PCT