Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03016 ATGAATAAACGTCGATTTCTTGCCTCTGAAACTCCAAAAAACGCCCTAAATCGCAAAAATTTGgattgtgtgttgaagagAAAAGTACTAAGCCCAATACTTGTTCACCAAGAAACTGTGAGTGCAACGCACCGGGTTTCAATTCCAAACGAAACACCCTCTTTCGTTTCCAAGGATTCGATTCTCTTTTCCTCCCACTCGCGTAAGCTTTCCACTCCGTTTCTCTCTCGACTTCATCGCTCACCACCGCTCCGGCCTGTAGCAAACATGGCAGAtgaaacaccaaatgatatgaaGGAGGAGGTTGTTGATATTGCACCATTTGATCctactaagaagaagaaaaagaagaaagttacCGTTGTAGATCCTGCAGATGATGAATCAGTGGATAAACTAACCGAGAAGACAGAAAATCTGTCTGTTTCTGATGGGATTGATACTGCATTTGCTGgtttgaaaaagaagaagaagaagcccGTTGAAATCAGTAACTTAAATGAGGAGAGTGCAGATGCAGTTGAAGATTTGGATGATCATgctgaagatgatgaagaagaagcgGTTTCTTTGCATCCTTGTTATCCTTGGGAAGGGAGTGTCCGTGATTATGAATATGAGGAGCTTCTTGGCAGGGTGTTTAATATTCTACGTGAAAATAATCCAGAACTTGCTGGACGTCCGCAAAGGACAGTAATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTTATGGATCTGTGCAAAACGATGCATCGACAGCCAGACCATGTTATGGCTTTCTTGCTTGCTGAACTGGGTACTAGTGGCTCCCTAGATGGACAACAAAGATTGGTTGTAAAGGGAAGATTTGCACCAAAGAATTTTGAAGGAATTCTGCGACGATATGTCAATGAATACGTTATTTGTCTTGGATGCAAGAGTCCAGACACACTACTAACAAAGGAGAATCGTCTATTCTTTCTCCGGTGTGAGAAGTGTGGATCAGGAAGATCGGTTGCTCAAATCAAAGCTGGTTTTGTTGCTCGTGTTGGCCGAAGGAATGCCGGAGGGACATGA 1080 0.388 MNKRRFLASETPKNALNRKNLDCVLKRKVLSPILVHQETVSATHRVSIPNETPSFVSKDSILFSSHSRKLSTPFLSRLHRSPPLRPVANMADETPNDMKEEVVDIAPFDPTKKKKKKKVTVVDPADDESVDKLTEKTENLSVSDGIDTAFAGLKKKKKKPVEISNLNEESADAVEDLDDHAEDDEEEAVSLHPCYPWEGSVRDYEYEELLGRVFNILRENNPELAGRPQRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTLLTKENRLFFLRCEKCGSGRSVAQIKAGFVARVGRRNAGGT 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03016 359 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 307 342 IPR016190 GO:0003743|GO:0006413
Tsu05g03016 359 Pfam Domain found in IF2B/IF5 229 336 IPR002735 GO:0003743|GO:0006413
Tsu05g03016 359 PANTHER BNAA02G05130D PROTEIN 90 355 - -
Tsu05g03016 359 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 203 310 IPR016189 GO:0003743|GO:0006413
Tsu05g03016 359 SMART eIF2Bneu4 228 337 IPR002735 GO:0003743|GO:0006413
Tsu05g03016 359 Coils Coil 163 187 - -
Tsu05g03016 359 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 90 355 IPR045196 GO:0003743|GO:0006413
Tsu05g03016 359 Gene3D - 201 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03016 Tsu-Chr5 40540842 40544874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03016 90 354 Eukaryotic Initiation Factors Gene Family AT5G20920 74.157 6.47e-134 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03016 K03238 - gmx:100783618 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03016 05 40540842 40544874 Tsu05g03016 05 40540842 40544874 ECH