Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03007 ATGGATCTACTCCTTCTTGAAAAGACCCTTTTATCCCTCTTCATCGCCGCAATAATCGCAATCACAATCTCAAAACTCCGTGGAAAACGGTTTAAACTTCCACCTGGTCCATTTCCAGTCCCAATCTTCGGTAATTGGCTTCAAGTCGGCGATGATCTCAACCACCGTAATTTAACCGATTTAGCCAAACGCTTCGGCGAAATTCTGCTACTCCGGATGGGACAACGAAACTTAGTTGTTGTCTCATCACCGGAGTTAGCAAAAGAAGTCCTTCACACACAAGGTGTCGAATTCGGTTCCAGAACAAGGAACGTGGTATTCGACATCTTTACTGGTAAAGGACAGGATATGGTTTTTACTGTCTACGGTGAACATTGGCGTAAAATGAGAAGAATTATGACAGTTCCATTTTTCACAAACAAAGTTGTACAACAATATAGATTCGGTTGGGAATCTGAAGCAGAAAGTGTTGTTAATGAtgttaagaaaaataatgaagCAAGTGTTGGTGGAATTGTGATTAGAAGAAGATTACAATTAATGATGTATAATATTATGTATAGGATTATGTTTGATAGAAGATTTGAAAGTGAAGAAGATCCTTTATTTGTGAAATTGAAAGCTTTGAATGGTGAAAGGAGTCGTTTGGCACAAAGTTTTGAGTATAATTATGGTgattttattccaattttaagaCCTTTTTTGAAAGGTTATTTGAAGGTTTGTAAAGAAGTTAAGGACCGTAGGTTGCAGCTTTTCAAAGACTATTTCGTTGATGAGAGGAagAAGCTTGAAAGCACCAAGAGTACCACTAGCAATGATGGACTTAAATGTGCAATTGATCACATTTTGGATGCTCAAAAGAAGGGAGAGATCAATGATGACAACGTTCTTTACATTGTTGAGAACATCAATGTTGCTGCCATTGAAACAACACTATGGTCAATTGAATGGGGAATTGCTGAGCTAGTGAACCACCAAGAGATCCAAAACAAAGTAAGAGAAGAGATGGATAGAGTTCTTGGACCAGGCCACCAAGTAACTGAGCCAGATCTTCAGAAGCTACCTTACCTACAGGCCGTGATCAAAGAGACACTTCGTCTTCGAATGGCAATCCCACTTCTCGTCCCACACATGAACCTTCATGATGCAAAGCTTGCGGGTTATGACATCCCGGCCGAGAGCAAGATATTGGTCAATGCATGGTGGCTCGCAAATAACCCGGCTCTATGGAAAAAGCCAGAGGAATTTAGGCCTGAGAGGTTCTTGGAGGAAGAGGCGCATGTTGAGGCTAATGGAAATGACTTTAGGTACCTTCCATTCGGTGTTGGTAGAAGGAGTTGCCCTGGAATTATTCTTGCTTTACCTATCCTTGGTATTACTATCGGGCGTTTGGTTCAGAATTTCGAGCTTTTGCCTCCACCCGGACAATCTAAGATTGACACTTCAGAGAAAGGAGGACAATTTAGTTTACACATACTCAAACATTCCACCATTGTTGCTAAGCCAAGATCATTTTAA 1521 0.3991 MDLLLLEKTLLSLFIAAIIAITISKLRGKRFKLPPGPFPVPIFGNWLQVGDDLNHRNLTDLAKRFGEILLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRFGWESEAESVVNDVKKNNEASVGGIVIRRRLQLMMYNIMYRIMFDRRFESEEDPLFVKLKALNGERSRLAQSFEYNYGDFIPILRPFLKGYLKVCKEVKDRRLQLFKDYFVDERKKLESTKSTTSNDGLKCAIDHILDAQKKGEINDDNVLYIVENINVAAIETTLWSIEWGIAELVNHQEIQNKVREEMDRVLGPGHQVTEPDLQKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPALWKKPEEFRPERFLEEEAHVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKPRSF 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03007 506 Gene3D Cytochrome P450 23 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 506 - -
Tsu05g03007 506 SUPERFAMILY Cytochrome P450 34 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 Pfam Cytochrome P450 34 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Tsu05g03007 506 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 PRINTS E-class P450 group I signature 359 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 PRINTS E-class P450 group I signature 400 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 506 - -
Tsu05g03007 506 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 PRINTS P450 superfamily signature 360 371 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03007 506 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03007 Tsu-Chr5 40418175 40422811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03007 1 505 Monolignol Biosynthesis Gene Families AT2G30490 84.356 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03007 K00487 - gmx:100499623 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03007 05 40418175 40422811 Tsu05g03007 05 40418175 40422811 ECH