Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03006 ATGGGGGTTGAAGTTTGCATGAATAAATTGTGTAAGGAAGGTTCTGTTGGTGAATGGAAGAAAGGGTGGTCTTTAATCTCTGGTGGATTTGCCAAACTCTGCAACAAATGCGGACTTGCCTTTGAGAATTCAGTTTTCTGCGATCAATTCCACCGTCTTGAAGCCGGTTGGAGGGAATGCAGCAAATGTAAAAAgCATATCCACTGCGGATGTACAGTATCAAAGTCTTTGTTCGAGTACCTTGATTTCGGCGGCATAAGTTGTGTTACCTGTGTTAAGGCTTCCCAGCTTTTTCTGGATACTGGGAATGCTAATAGGTTTGCTCATATAACCAAAAACAATGGAAGTGATCGATATGCTGAACATACTGATGGTGGACTATCGCTGGAATGTGTTGGTAAAGGAAATCTTATGCAGTTGCGGAAAACTGGTGAAGCTGGTGAAACAAGCTTTTGGCCACAAGCTCGAAGAGATGGTGTGTTTTCAAGTATTGGTTCAAAAAGCGAAGAAATCAATTGTCGATTCAACAAAACTGATACAGGATTTTTTAATGCGATGAAACATTCTAGTAATTTATCGACACTTACTACAACAGAAAATAATAGACCAAAATGGGAGATCAAAAGTAGAGATGAACCACTTTCGCTGAAGATTTCTCTGGGAACCTCATCGAGAACTTGTGTGCTGCCTTCTGCCACAGAGATCGTAGATGGTAAACTTGAGGGTAAAACATCTTCTATTTCTCAACAAGGGCAATATTCTCACCCTATATTGGCTAACCAATCGAAGACTGGTGTTACTGTGAATCTTGAAACAAATAAAGGCATGACTTCTCTTCCACGCATTGGTCGGCCACCTGCTGATGTGAAAGGGAAAAATCAGCTACTTTCTCGATACTGGCCGAGGATTACTGATCAAGAGCTGGAGAAATTGTCTGGAGATTTGAAGTCTAAGATAGTGCCGTTATTTGAGAAGGTGTTAAGTCCGAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCGTGTGCTGAGACTTTTCTTCCTCCTATTGTGCAATCAGAAGGTGTCCCTTTACAGTTCCAAGATGTAAAGGGGAACGAGTGGACTTTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTGTTAGAGGGCGTGACCCCTTGCATACAATTCTTGCGGTTAAATGCTGGCGATACAGtAACATTTAGTCGGATAGATCCCGGGGAAAAATTTGTACTTGGTTTTAGAAGAGCTTCGGGTTCTATCGATACACAGGATGATTCTACATCAGCTCATTCTAACGGGATTTCGACCAAGGATACAAATGTTTCTGGTGCAACTAAGAATCTGAACTCGTTAGGTAGTTTTTCTGATCTTCTTCAATCAATGAGAGGTAATGGCGGGGAACCCTACTTAAATGGACATTCAGAACATCTGCCTTTGGGTAATGGAACTGCTGATTGGCTGAAAACTACACATTGTGAGGAGGCGGGGAACAATAGTCCATTGCAGCGACCAGTTTCGGTTTCAGAAAAGAAAAGGACTTGCAAGATTGGGACAAAAACTAAGAGGTTGGACATTCGTAGTGAAGATTCTTTGGAGTTAAGACTTACATGGGAAGAAGCACAAGACTTGCTTTGTCCGCCACCTAATGTCCAGCCAAATATTGTACAAATCGACGACATAGTATTCGAAGAATATGATGAACCCCCGGTTTTCGGAAAGGGAACTATAACCAATGCCTGTCCATCTGGGTCTCCAGATTCTGCTTCAGAGCAGCTTGGTCCAAACGAACAAGAAAATCTTCTGCGAAGCAGAAAAGGTACAATTTCTAAAAAGCGAAAAGTTGTAGAAAAGAGCAAGTCAATTCAAGAAGACAAGCTTCAAAACCTAGATACTCTTGCAAGTATGGCAATTTTAGGAGACAATCTTGTTGACCGTGACGAGTCATGTTCAGCTGGAGCCACCACAAAACATCCGAGACATCGTCTTGGATGCACTTGTATCGTCTGCATTCAACCCCCAAGTGGACAAGGAAAACATAAACCGACATGTACTTGCCTTGCCTGCGAAACTTTGAAGCGCAGGTCCAAGACTCTTATGATGCGTAAGAAGAAAAACCAATCAGAATCTGAAGCAGCCGCTCCCCAAAATGATCAAACGAATCATAGTGGTGAAGCAGATACCAGTGGTAGTGCATCAAGACAAGATACAAATCACTCAACGGACGAGGGAAGCCTAAATGGTGGTCAGAAAGATGCTGTTGAGCCTAGTGCCGCGGGACAATTAGATTTGAATTGTCATCCCAGTCATGAAGATATGGAAATGGATAAACAGGATTGA 2358 0.4241 MGVEVCMNKLCKEGSVGEWKKGWSLISGGFAKLCNKCGLAFENSVFCDQFHRLEAGWRECSKCKKHIHCGCTVSKSLFEYLDFGGISCVTCVKASQLFLDTGNANRFAHITKNNGSDRYAEHTDGGLSLECVGKGNLMQLRKTGEAGETSFWPQARRDGVFSSIGSKSEEINCRFNKTDTGFFNAMKHSSNLSTLTTTENNRPKWEIKSRDEPLSLKISLGTSSRTCVLPSATEIVDGKLEGKTSSISQQGQYSHPILANQSKTGVTVNLETNKGMTSLPRIGRPPADVKGKNQLLSRYWPRITDQELEKLSGDLKSKIVPLFEKVLSPSDAGRIGRLVLPKACAETFLPPIVQSEGVPLQFQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQFLRLNAGDTVTFSRIDPGEKFVLGFRRASGSIDTQDDSTSAHSNGISTKDTNVSGATKNLNSLGSFSDLLQSMRGNGGEPYLNGHSEHLPLGNGTADWLKTTHCEEAGNNSPLQRPVSVSEKKRTCKIGTKTKRLDIRSEDSLELRLTWEEAQDLLCPPPNVQPNIVQIDDIVFEEYDEPPVFGKGTITNACPSGSPDSASEQLGPNEQENLLRSRKGTISKKRKVVEKSKSIQEDKLQNLDTLASMAILGDNLVDRDESCSAGATTKHPRHRLGCTCIVCIQPPSGQGKHKPTCTCLACETLKRRSKTLMMRKKKNQSESEAAAPQNDQTNHSGEADTSGSASRQDTNHSTDEGSLNGGQKDAVEPSAAGQLDLNCHPSHEDMEMDKQD 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03006 785 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 594 783 - -
Tsu05g03006 785 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 591 - -
Tsu05g03006 785 ProSiteProfiles B3 DNA-binding domain profile. 323 424 IPR003340 GO:0003677
Tsu05g03006 785 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 594 783 - -
Tsu05g03006 785 Pfam B3 DNA binding domain 323 423 IPR003340 GO:0003677
Tsu05g03006 785 MobiDBLite consensus disorder prediction 706 785 - -
Tsu05g03006 785 MobiDBLite consensus disorder prediction 427 449 - -
Tsu05g03006 785 Gene3D - 301 426 IPR015300 -
Tsu05g03006 785 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 591 - -
Tsu05g03006 785 SUPERFAMILY DNA-binding pseudobarrel domain 320 422 IPR015300 -
Tsu05g03006 785 CDD B3_DNA 321 422 IPR003340 GO:0003677
Tsu05g03006 785 SMART B3_2 323 424 IPR003340 GO:0003677
Tsu05g03006 785 MobiDBLite consensus disorder prediction 716 753 - -
Tsu05g03006 785 MobiDBLite consensus disorder prediction 585 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03006 Tsu-Chr5 40403091 40408475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03006 1 765 B3 DNA Binding Superfamily AT2G30470 41.067 2.01e-178 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu05g03006 B3 3.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03006 - - lang:109356710 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00749 03 6653231 6660183 Tsu05g03006 05 40403091 40408475 PCT