Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03004 atgcaACATCAATCTTCAAACCCTAATCCCAATTCCAATCCCAATCCTCACAATGCAAACACTACCTCCCAATTACCACCACCAGTGCCACCACCATCCACGGCGGCGACAACCGCCACCGGAAAATCCTCTCTATTCACACGCTCCGGCGGAAATGACGGTTCCCATCACCGGCGAGCTCACTCAGAAGTCAATTTCCGGTTACCAGACGACATGATGGACTTATCACCGTCCGATCCATTCACCGGTGGATCGTCAACGGCGAGCTTAGATGAGATCGGATCCGAAGATGACTTATTCTCGACGTACATTGATATGGATAAGCTCGGTGGTTCGAATGAGTTGGGAGATGCCGGAGCAGATCTGGTTGGAAATGGTGAACCGGAGAAGAATCCGGTGAGGCCGAGGCATAGGCATAGTAATTCGGTTGATGGTTCTTCGTCGTTTGGGGAGATTATGGATGGGAAGAAAGCTATGCCTCCTGATAAGTTAGCTGAACTTTGGTCTATTGATCCAAAGCGTGCAAAGAGAATACTTGCAAATCGACAATCTGCTGCTCGTTCAAAAGAGAGAAAGGCCCGCTATATACATGAACTAGAGCGCAAAGTTCAGACCCTGCAGACTGAAGCTACAACTCTTTCTGCCCAACTGACACTATACCAGaGAGACACAACAGGTCTGAGTACTGAAAATACAGAGCTTAAACTCCGTCTGCAAGCCATGGAGCAACAAGCACATCTTCGTGATGCTCTTAATGATGCACTGAAGAAAGAAGTTGAGAGGCTGAAAGTTGCTACCGGGGATATAATGAGCCACACTCAATCTTTTAATCTTGGTATGCACCAGATGCAATTTACAGAATCAAATTATGCTCCAATTCCACCGCAACCAAGTCCTAATCACCGGAACACCCAGCTGCCACCATTTGGTCACTCCCCATCTAGCATGCCATCTCATCAACTGCACCAAACAAATTCTCTTTCATTTTCAGAATTATTGCAAAATGACCAGATTGGTCGATTTCAGGGACTTGACATTAGTAGTAAAGGAACAACTGTTGTAAAGTCTGAAGACCCCTCTCTTTCTGCAAGTGAGAGTAGCACTACATTTTGA 1113 0.4618 MQHQSSNPNPNSNPNPHNANTTSQLPPPVPPPSTAATTATGKSSLFTRSGGNDGSHHRRAHSEVNFRLPDDMMDLSPSDPFTGGSSTASLDEIGSEDDLFSTYIDMDKLGGSNELGDAGADLVGNGEPEKNPVRPRHRHSNSVDGSSSFGEIMDGKKAMPPDKLAELWSIDPKRAKRILANRQSAARSKERKARYIHELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAHLRDALNDALKKEVERLKVATGDIMSHTQSFNLGMHQMQFTESNYAPIPPQPSPNHRNTQLPPFGHSPSSMPSHQLHQTNSLSFSELLQNDQIGRFQGLDISSKGTTVVKSEDPSLSASESSTTF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03004 370 MobiDBLite consensus disorder prediction 288 323 - -
Tsu05g03004 370 MobiDBLite consensus disorder prediction 52 68 - -
Tsu05g03004 370 MobiDBLite consensus disorder prediction 1 20 - -
Tsu05g03004 370 Coils Coil 189 216 - -
Tsu05g03004 370 PANTHER ATBZIP TRANSCRIPTION FACTOR 6 367 - -
Tsu05g03004 370 MobiDBLite consensus disorder prediction 35 51 - -
Tsu05g03004 370 MobiDBLite consensus disorder prediction 351 370 - -
Tsu05g03004 370 SUPERFAMILY Leucine zipper domain 173 224 IPR046347 GO:0003700|GO:0006355
Tsu05g03004 370 MobiDBLite consensus disorder prediction 1 92 - -
Tsu05g03004 370 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 171 234 IPR004827 GO:0003700|GO:0006355
Tsu05g03004 370 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 367 - -
Tsu05g03004 370 MobiDBLite consensus disorder prediction 115 156 - -
Tsu05g03004 370 Pfam bZIP transcription factor 173 228 IPR004827 GO:0003700|GO:0006355
Tsu05g03004 370 Gene3D - 172 246 - -
Tsu05g03004 370 MobiDBLite consensus disorder prediction 303 323 - -
Tsu05g03004 370 CDD bZIP_plant_RF2 174 223 IPR044759 GO:0003700|GO:0006355
Tsu05g03004 370 SMART brlzneu 169 233 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03004 Tsu-Chr5 40392966 40395760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03004 12 370 bZIP Transcription Factor Family AT2G40620 49.750 8.35e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Tsu05g03004 bZIP_1 3.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03004 - - vra:106763153 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03004 05 40392966 40395760 Tsu05g03004 05 40392966 40395760 ECH
Tsu03g00759 03 6746535 6749523 Tsu05g03004 05 40392966 40395760 PCT