Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03002 ATGGCTTCTTCTACTTTGCTAGTTACTATGTTCTTTCTCTTCATGGAGATGCATTTTCATGGTGTTGCGGCTAACTATGGCGGTTGGCAGAGTGGTCATGCCACTTTCTATGGTGGTGGTGATGCTGCAGCTACAATGGGAGGTGCATGTGGTTATGGAAATTTGTACAATCAAGGATATGGTACCAACACTGCAGCTTTAAGCACAACTTTGTTCAACAATGGCTTAAGTTGTGGAGCTTGTTATGCAATGAGATGTGTTAGTGACTCAAAATGGTGTAAGCCTAGCACAATTGTTGTTACTGCCACAAacttttgtccaccaaacatggCTTTGCCAAACAATAATGGTGGTTGGTGTAATCCTCCTTTACAACACTTTGATATGGCAGAACCAGCATTCCTTCAAATTGCACAATATAAAGCTGGAATTGTGCCTATAACATTTAGAAGAGTGTCATGTATAAAAAAGGGAGGAATAAGGTTCACAATCAATGGCCATTCTTACTTCAATTTGGTTTTGGTCACCAACGTCGCCGGTGCTGGAGATGTCCATGCAGTCTCAATCAAAGGGTCCAAAACTAGTTGGCAAACTATGTCAAGAAATTGGGGACAAAATTGGCAAAGCAATTCCTACCTCAATGGACAAAGCCTCTCTTTTAAAGTCACCACCGGTGACGGTAGAACCGTGACAAGCTACAATGTGGCACCGGCTGATTGGCAATTTGGCCGGACCTTTCAAGGGGGTCAGTTTTAG 756 0.4167 MASSTLLVTMFFLFMEMHFHGVAANYGGWQSGHATFYGGGDAAATMGGACGYGNLYNQGYGTNTAALSTTLFNNGLSCGACYAMRCVSDSKWCKPSTIVVTATNFCPPNMALPNNNGGWCNPPLQHFDMAEPAFLQIAQYKAGIVPITFRRVSCIKKGGIRFTINGHSYFNLVLVTNVAGAGDVHAVSIKGSKTSWQTMSRNWGQNWQSNSYLNGQSLSFKVTTGDGRTVTSYNVAPADWQFGRTFQGGQF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03002 251 Gene3D - 159 251 IPR036749 -
Tsu05g03002 251 PANTHER EXPANSIN-A15 7 251 IPR002963 GO:0009664
Tsu05g03002 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Tsu05g03002 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Tsu05g03002 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Tsu05g03002 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Tsu05g03002 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Tsu05g03002 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Tsu05g03002 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Tsu05g03002 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Tsu05g03002 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Tsu05g03002 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Tsu05g03002 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Tsu05g03002 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Tsu05g03002 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Tsu05g03002 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Tsu05g03002 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Tsu05g03002 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Tsu05g03002 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Tsu05g03002 251 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Tsu05g03002 251 Pfam Lytic transglycolase 64 149 IPR009009 -
Tsu05g03002 251 Gene3D - 16 154 IPR036908 -
Tsu05g03002 251 PANTHER EXPANSIN 7 251 - -
Tsu05g03002 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Tsu05g03002 251 SMART dpbb_1 64 149 IPR007112 -
Tsu05g03002 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03002 Tsu-Chr5 40378787 40380533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03002 4 251 Expansin Gene Family AT2G40610 74.699 7.47e-141 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03002 - - gmx:100816848 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03002 05 40378787 40380533 Tsu05g03002 05 40378787 40380533 ECH
Tsu03g00771 03 6818966 6821430 Tsu05g03002 05 40378787 40380533 PCT