Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03001 ATGGGTGGAAAAAAAGTGAAGCTTGCATTCATAACCAAGGATACAGCAAGAAAAGCAACATACAAGAAAAGAGTAAAAGGTTTGATGAAGAAGCTCAACGAAATCACAACACTATGTGGAATTAAGGCTTGTGGTATAGTGTTCAACCCCGATGATCTTGAACCACAAATATGGCCATCCAATGAAGGAGTTCAAAGTGTGTTGAACCAATTCTTGCATGTTCCCGAATTTGATCGGGACCGAAAGATGTTGAATCATGAAAGTTACTTGAAGGAAAAGATTCAAAAGTTGAATGAGAAGTTGACGAAAAAAACGAAGGAGAATAGGAAGATGGAGATGACTGTTCAATTGTATCGCTTTCTTGAGAAAGGGGACATTACAGAGAATTTAAGTATTGTCGATCAAGATGATCTCGCATATGTGATTAATGAGAAAATGGAGGAAATTAATATGAAGATGATGGAAATGGAGATCAATGTTCAAAGGGCTCCAGGTTTGTGA 501 0.3733 MGGKKVKLAFITKDTARKATYKKRVKGLMKKLNEITTLCGIKACGIVFNPDDLEPQIWPSNEGVQSVLNQFLHVPEFDRDRKMLNHESYLKEKIQKLNEKLTKKTKENRKMEMTVQLYRFLEKGDITENLSIVDQDDLAYVINEKMEEINMKMMEMEINVQRAPGL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03001 166 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tsu05g03001 166 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Tsu05g03001 166 Gene3D - 14 123 IPR036879 GO:0003677|GO:0046983
Tsu05g03001 166 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Tsu05g03001 166 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu05g03001 166 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 157 - -
Tsu05g03001 166 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu05g03001 166 PANTHER MADS BOX PROTEIN 3 157 - -
Tsu05g03001 166 Coils Coil 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03001 Tsu-Chr5 40375719 40376219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03001 1 153 Type I MADS-box Gene Family AT5G48670 45.752 1.44e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu05g03001 SRF-TF 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03001 - - cam:101507243 215.312