LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g02991	ATGTCGGAGATTGAACAAGTTCCGCCAGCTACGGCGGAAACCACCACGTTATTCGAAAAATACGAGATCGGAAAACTTCTAGGATGTGGCGCGTTTGCGAAAGTATATCACGCGCGGAACATCGAGAATGGACAAAGTGTTGCTGTGAAAGTAATTAACAAGAAGAAAGTTACTGCAACTGGTCTTGCTGGCAACGTGAAACGTGAAATTTCGATTATGAGTCGTCTTCGTCATCCGAATATTGTTAAGCTTCATGAAGTTCTTGCTACGAAAACTAAGATCTATTTTGTTATGGAATTTGCTAAAGGTGGTGAACTTTTTGCGAAGATTGCTAGTAAAGGAAGGTTTAGTGAAGATCTATCTAGGAAGCTTTTTCAACAGTTGATTTCTGCTGTTGGTTATTGTCATTCTCTTGGTGTTTTTCATCGTGATTTGAAACCGGAAAATCTATTACTTGATGATAAGGGGAATTTGAAGGTTTCAGATTTCGGATTAAGTGCGGTTAAAGAGCAAATTCGTGTGGATGGAATGTTGCACACGCTTTGCGGAACGCCTGCTTACGTCGCACCGGAGATTTTGGCGAAGAGAGGTTATGATGGAGCTAAGGTGGATGTTTGGTCGTGTGGTATTATTCTCTTTGTTCTTGTTGCTGGTTATCTTCCATTTAACGATCCAAATTTGATGGTGATGTATAGGAAGATATATAGTGGAGAATTTAAGTGTCCGCGATGGTTTTCACCGGATCTAAGGAGGTTTTTATCGCGGTTGTTGGATACGAAACCTGAGACGAGGATAACCGTTGAGGAGATTATGCAGGATCCTTGGTTTAGAAAAGGGTATAAGGAGGTGAAGTTTCATGAAGAGGGGGTTGGACTTGGGGAGAAGGTTAATGGGGAAGAAGAAAGTAAAACAACGGATTTGAACGCGTTTGatattatatcatttttctcttcagGGTTGGATCTTTCAGGGTTGTTTACAGATGTAGAAGGGGAGAGATTCGTGTTGAGGGAGTCGTCGGAGAAGGTTGTTGAGAAGGTGGAGGCAGCAGCGAAGGCGGAGGGACTAGTGGTAAGAAAGAAGAAGGAATTTGGGGTGGAGATTGAGACCCAAAACGGGGGTTTGGTCATTGGGGTTGAGGTTTACCGGTTATTGGCTGAGGTGGTTGTGGTTGAGGTGAAGAGGTTTGGCGGGGATGAGCTTGCTTTTGATGAAGTGTGGAAGAATAAGTTGAGACCCCACTTGTGTGATGCGACGACGTCGCAACAGGACCAAACTCAGTCTCATGCGACGGCGGTCTGTGCTGAATAA	1311	0.4333	MSEIEQVPPATAETTTLFEKYEIGKLLGCGAFAKVYHARNIENGQSVAVKVINKKKVTATGLAGNVKREISIMSRLRHPNIVKLHEVLATKTKIYFVMEFAKGGELFAKIASKGRFSEDLSRKLFQQLISAVGYCHSLGVFHRDLKPENLLLDDKGNLKVSDFGLSAVKEQIRVDGMLHTLCGTPAYVAPEILAKRGYDGAKVDVWSCGIILFVLVAGYLPFNDPNLMVMYRKIYSGEFKCPRWFSPDLRRFLSRLLDTKPETRITVEEIMQDPWFRKGYKEVKFHEEGVGLGEKVNGEEESKTTDLNAFDIISFFSSGLDLSGLFTDVEGERFVLRESSEKVVEKVEAAAKAEGLVVRKKKEFGVEIETQNGGLVIGVEVYRLLAEVVVVEVKRFGGDELAFDEVWKNKLRPHLCDATTSQQDQTQSHATAVCAE	436

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tsu05g02991	436	ProSitePatterns	Protein kinases ATP-binding region signature.	27	50	IPR017441	GO:0005524
Tsu05g02991	436	CDD	CIPK_C	308	416	-	-
Tsu05g02991	436	Pfam	NAF domain	306	360	IPR004041	GO:0007165
Tsu05g02991	436	PANTHER	-	1	421	-	-
Tsu05g02991	436	ProSiteProfiles	NAF domain profile.	302	327	IPR018451	GO:0007165
Tsu05g02991	436	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	140	152	IPR008271	GO:0004672\|GO:0006468
Tsu05g02991	436	Pfam	Protein kinase domain	21	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Tsu05g02991	436	SMART	serkin_6	21	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Tsu05g02991	436	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	1	421	-	-
Tsu05g02991	436	SUPERFAMILY	Protein kinase-like (PK-like)	18	285	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu05g02991	Tsu-Chr5	40254673	40257465	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g02991	1	421	CBL-interacting serine-threonine protein kinases	AT2G30360	63.279	0.0	544

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Tsu05g02991		Pkinase	4.1e-73	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g02991	-		K12761	gmx:100815088	570.852

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu05g02991	05	40254673	40257465	Tsu05g02991	05	40254673	40257465	ECH
	Tsu03g00775	03	7003368	7004923	Tsu05g02991	05	40254673	40257465	PCT

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