Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02985 ATGTCCAGAGACAGACTAGATGAAATAGCAAAAATCAATTCAGAGGGAGAAACATCATCTCAAATGGGAAGGAAACATTTTCATGGTCAAGTTGTTGGAACAACCTTAAACACAGTAACTCCTTGTGCTGCATGTAAGCTATTGAGAAGAAGGTGTGCTGAGGAATGTCCTTTCTCTCCTTACTTTTCACCACATGAGCCTCATAAATTTGCAGCTGTTCATAAAGTGTTTGGTGCAAGCAATGTCTCCAAATTGCTATTGgagGTACCTGAAGGACAAAGAGCTGATGCAGCAAATAGTATGGTTTATGAAGCAAATTTGAGATTAAGAGATCCTGTTTATGGATGCATGGGTGCAATATCATCATTACAACAACAAGTTCAATCTTTACAAGCAGAACTTCATGCAGTTAGAGCTGaaatactaaaatataaatatagagaagcagcttcttttatttcttctcAAGTATCAATCCCTACAAATACAAACTCACAAGGTCTTTCTCAACCTCTTGTTCTTCCTACTTTAGCTCCTCCATCTCCTTCTCTTCCTCCACCACAAAAAATATTAGCTTCTCAATCGATTATCCTTTCGTCGTTgtcttcgtcttcttcttcttcggtcTACACTCCATCTAAGAGTACAATGAGTCATGGATCTATTTCTAGTGAAAATATTCCATATTTTATTTAG 696 0.3362 MSRDRLDEIAKINSEGETSSQMGRKHFHGQVVGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISSLQQQVQSLQAELHAVRAEILKYKYREAASFISSQVSIPTNTNSQGLSQPLVLPTLAPPSPSLPPPQKILASQSIILSSLSSSSSSSVYTPSKSTMSHGSISSENIPYFI 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02985 231 ProSiteProfiles LOB domain profile. 40 141 IPR004883 -
Tsu05g02985 231 MobiDBLite consensus disorder prediction 208 231 - -
Tsu05g02985 231 Pfam Lateral organ boundaries (LOB) domain 41 138 IPR004883 -
Tsu05g02985 231 Coils Coil 120 140 - -
Tsu05g02985 231 PANTHER LOB DOMAIN PROTEIN 27 230 - -
Tsu05g02985 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 27 230 - -
Tsu05g02985 231 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02985 Tsu-Chr5 40174681 40176139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02985 33 156 AS2 family AT2G30340 82.258 5.18e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu05g02985 LOB 3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02985 - - ccaj:109795340 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02985 05 40174681 40176139 Tsu05g02985 05 40174681 40176139 ECH