Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02971 ATGAACCTTTTCACTACTAACATTCCATCATCCTTCCCCGTTGGGCTCAGAATTCTTGCAGTTGATCATGACACAAATGTTCTCTGCGCTATTCACCACATCTGCAAACGATTACGCTATCAAGTTACCACATGTTGTACTATTTCTGATGCAATGGGTCACTTGTTCCAACAACATTTTGACATCATACTCATTGAAACTCACATTCCAGACAAGGATACTAATGCTTTTGTTCAACTAATGACTTCAGATTTCAAAATTCCGGTCATTAtgaTGTCTCTTGATAACCAACTGCATTCTGTTATGAATTCCATTTCCAGCGGGGCTTGCTGTTATTGGACTAAACCATTAGATGAGAATCTATTCAAGAATATGTGGCAACATGTTGTGCGAAAGGCTTTACATGAACTCGAGGAGGCTAAAGTGCTTAAAAAGCCAGGAAGAGATGATGTTGATGTTTCGCAAAAGGCTTTCATCCAAACTGATCCACGTGAACTTTATGAGGCTAAAGGGCTTAAAAAGAAAGgaagagatgatgatgatgatgatgttgtgcGAAAGGCTTTCAGCCCAAGTGATCCACATGAATTCGAAGAGGCTAAAGGGCTTAAAAAGCGAGGAAGAGATGATGTTGATGTTTCAAAACAACCTCTTGCAAAGAAACCTCGTCTCTCTTGGACACCTGATTTGCACCAAAAATTTATGTCGGCGGTGAATCATCTTGGGATTAACGATGCAGTGCCTAAAAAAGTTCTTAAGATCATGGATTGTCCTGGCTTGAAAGTACATCATGTAGCTAGTCATTTGCAGAAATATAGAAAGTATTTAAAAGGTGGGATAAAAAAGTCAAAgatgaatgaatttgaatttcaaggtCACAAGAACTATGAAACGCAATACTCAATGACAGCACATGATCAATGCCATGATAAAAGTCTTGCAGAACAACATTGgaaagaaattgattttgattttcatgGTCAGAAGAACAATGAAACACAATACTCACTGACGGTTGAGACCCTTTCAGCTTTTGCAGGTGTGTTAGTATACTTTCTGGTCCATTGTGTTGTAGTATGTACCTGGGGCTGGTCCTGTCTGATAGTTTCACTGGTAAGGCACCAGTGGTTGCAGTTGGAGAGGCCTGTGTACATTGGTCCGAGGCTGATTGTGTTCGGTGGTGCCACTGCACTTAAAGGCAATTATGTTGGAAATATGCTCAAACTTGAATGTTTGCATATGGAGCTATCCGACTCAATGCAAAAGCTAAGTACTGAAGTGAGTCAAGTTGTTGAGGAGCTTGATAAGGTATTGTCATTTAATGATTTACTCATCTCATTTAAGAATCATTCGGACGTAGATCGCCTTGCCCGTGGTGTTGGTCCAGTTTCTTTAGTGGGTGAGTATGACGGCGACAGAAAGATTGAAGATTTGAAACTCCTCTATAGAGCATATCTTTCACATGCTCTGTCTTCTGGGCGCTTGGAAGATAATAAGAACCTCCCACATGGTGGGAATCCCAAGATTCCCATGAAGGCGATAAACTTCCTCTAA 1554 0.3867 MNLFTTNIPSSFPVGLRILAVDHDTNVLCAIHHICKRLRYQVTTCCTISDAMGHLFQQHFDIILIETHIPDKDTNAFVQLMTSDFKIPVIMMSLDNQLHSVMNSISSGACCYWTKPLDENLFKNMWQHVVRKALHELEEAKVLKKPGRDDVDVSQKAFIQTDPRELYEAKGLKKKGRDDDDDDVVRKAFSPSDPHEFEEAKGLKKRGRDDVDVSKQPLAKKPRLSWTPDLHQKFMSAVNHLGINDAVPKKVLKIMDCPGLKVHHVASHLQKYRKYLKGGIKKSKMNEFEFQGHKNYETQYSMTAHDQCHDKSLAEQHWKEIDFDFHGQKNNETQYSLTVETLSAFAGVLVYFLVHCVVVCTWGWSCLIVSLVRHQWLQLERPVYIGPRLIVFGGATALKGNYVGNMLKLECLHMELSDSMQKLSTEVSQVVEELDKVLSFNDLLISFKNHSDVDRLARGVGPVSLVGEYDGDRKIEDLKLLYRAYLSHALSSGRLEDNKNLPHGGNPKIPMKAINFL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02971 517 Pfam Response regulator receiver domain 18 122 IPR001789 GO:0000160
Tsu05g02971 517 MobiDBLite consensus disorder prediction 172 220 - -
Tsu05g02971 517 SMART REC_2 16 126 IPR001789 GO:0000160
Tsu05g02971 517 Gene3D - 218 278 - -
Tsu05g02971 517 SUPERFAMILY Homeodomain-like 219 277 IPR009057 -
Tsu05g02971 517 SUPERFAMILY CheY-like 15 137 IPR011006 -
Tsu05g02971 517 ProSiteProfiles Response regulatory domain profile. 17 130 IPR001789 GO:0000160
Tsu05g02971 517 Gene3D - 14 135 - -
Tsu05g02971 517 Pfam Chloroplast envelope transporter 416 500 IPR031610 -
Tsu05g02971 517 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 12 305 - -
Tsu05g02971 517 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 221 274 IPR006447 GO:0003677
Tsu05g02971 517 Pfam Myb-like DNA-binding domain 224 273 IPR001005 -
Tsu05g02971 517 MobiDBLite consensus disorder prediction 172 217 - -
Tsu05g02971 517 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 305 IPR045279 GO:0009736
Tsu05g02971 517 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 218 277 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02971 Tsu-Chr5 40020726 40023781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02971 12 277 Response Regulator Gene Family AT4G31920 33.829 7.48e-36 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tsu05g02971 Response_reg 4.2e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02971 - K14491 fve:101293581 180.644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02971 05 40020726 40023781 Tsu05g02971 05 40020726 40023781 ECH