LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g02962	ATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCCGACACCATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAACAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTACAACATCCAAAAAGAATCCACGCTCCATCTCGTTCTCCGTCTCCGCGGAGGCATGCAAATCTTCGTCAAAACCCTAACCGGAAAAACCATCACACTCGAAGTCGAATCATCAGACACAATCGACAACGTGAAGGCGAAGATTCAAGATAAGGAAGGGATTCCACCTGATCAGCAACGATTGATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAATATTCAGAAAGAATCTACACTTCATCTTGTTCTTAGACTCCGTGGTGGTGCCAATTTATAA	468	0.4466	MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGANL	155

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu05g02962	155	Pfam	Ubiquitin family	79	150	IPR000626	GO:0005515
	Tsu05g02962	155	Pfam	Ubiquitin family	3	74	IPR000626	GO:0005515
	Tsu05g02962	155	PRINTS	Ubiquitin signature	11	31	IPR019956	-
	Tsu05g02962	155	PRINTS	Ubiquitin signature	32	52	IPR019956	-
	Tsu05g02962	155	PRINTS	Ubiquitin signature	53	74	IPR019956	-
	Tsu05g02962	155	ProSitePatterns	Ubiquitin domain signature.	103	128	IPR019954	-
	Tsu05g02962	155	ProSiteProfiles	Ubiquitin domain profile.	1	76	IPR000626	GO:0005515
	Tsu05g02962	155	PANTHER	UBIQUITIN	1	153	-	-
	Tsu05g02962	155	SUPERFAMILY	Ubiquitin-like	75	153	IPR029071	-
	Tsu05g02962	155	PANTHER	-	1	153	-	-
	Tsu05g02962	155	CDD	Ubl_ubiquitin	77	152	-	-
	Tsu05g02962	155	CDD	Ubl_ubiquitin	1	76	-	-
	Tsu05g02962	155	SUPERFAMILY	Ubiquitin-like	1	76	IPR029071	-
	Tsu05g02962	155	ProSitePatterns	Ubiquitin domain signature.	27	52	IPR019954	-
	Tsu05g02962	155	ProSiteProfiles	Ubiquitin domain profile.	77	152	IPR000626	GO:0005515
	Tsu05g02962	155	Gene3D	-	1	77	-	-
	Tsu05g02962	155	Gene3D	-	78	154	-	-
	Tsu05g02962	155	SMART	ubq_7	77	148	IPR000626	GO:0005515
	Tsu05g02962	155	SMART	ubq_7	1	72	IPR000626	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu05g02962	Tsu-Chr5	39922658	39923125	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g02962	1	78	Cytoplasmic Ribosomal Protein Gene Family	AT3G62250	97.436	3.94e-50	156

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g02962	-		K08770	psom:113290303	298.901