Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02958 atgcAGGTTTTGCCATCTCCTACAACTGGTGCTTTTGCTAGTTACAATTGGATGAACAATTCTGAAGAGAATCAGCATATTGCAAATGAAACTGACAAAAGCTTCTCaaatttctcttttcaaaaCCAACAAGGACCTGTTGTTACTGGATCCAATACTACTTTTCAATCATCAACAGTTGCAGTTGAACAGCAGCAACCATGGAGTTATCAAGAAAACACAAATCAGAATGGTTTTTCACCTGAAAACAATATGATCCAAACTGAAAACAACAACACTTCAATGCAGAGTTTTTCACCTGAAACCAATATGATCCAAGCTGAAAACAACAACATTTCAATGCAGACTTTTTCTCCTGAGATTGCTAATGTTCAAACCATCACCAACAACAATGGATTCCAATCAGATCATAACACCAATTACACAATCTTAAGCAGAAGGTCAAATGATGGATACAATTGGCGAAAATATGGACAAAAACAAGTGAGAGGAAGTCAAAATCCAAGAAGTTATTACAAATGCACTTACCCTAATTGTTCTACAAAGAAGAAAGTTGAGAGATCAATTGAAGGACGAATTACTGAGATTGTTTATAAGGGTAATCATAATCATCCTAAGCCTCAAGCTGGTGTTAGGAGaaactcatcatcatcatcttctaaTTCTCTTGTGATTGTTCCTGTTAATCCAAATGCTAATGAAATCCATGATCATTCATATGGTTCACATGGTAATGGACAAATTGATTCTGTTGCTACTCCTGAGAATTCGTCGATATCAATAGGAGGTGATGATGATTTCGAGCAGAGTTCTCTTCAGAGGTCTAGATCTGTTGGTCCTGATGAATTAGTTGAAGAGGAACCTCAACCTAAAAGATGGAGAAATGAGGGTATAGTCCCTGCACACAGAACAGTGAGAGAACCTAGAGTTGTTGTTCAGACAACAAGTGACATTGACATCCTGGATGATGGTTACAAATGGAGGAAGTATGGACAGAAAGTTGTCAAGGGTAATCCAAATCCAAGGAGTTACTACAAATGTACACACACAGGTTGTACTGTGAGGAAACATGTCGAACGAGCGTCACATGATATAAAGGCAGTGATCACAACTTATGAGGGGAAACACATTCATGATGTTCCTGCAGCTCGTGGAAGTGGAAGCAATTCTATGAACAGACCAACTCCAAACAATCCTTTAAATCAATCCAATGCTCCCTTTGCCATAAGGCCTTTACAGATGCAACTGCCGCAAGGGCAAATACGTCCTTTCCACCCTGATTTGCTTCTTGGTCAAGGAAACTATGGTGTCTCAGGATTTGGGAATCAAATGGTGCCTTACATGAatcaacagcagcagcagcaacaacagcaACACATGTctgaaaatggtttttcctcCTTGTTGTGCTGA 1413 0.3673 MQVLPSPTTGAFASYNWMNNSEENQHIANETDKSFSNFSFQNQQGPVVTGSNTTFQSSTVAVEQQQPWSYQENTNQNGFSPENNMIQTENNNTSMQSFSPETNMIQAENNNISMQTFSPEIANVQTITNNNGFQSDHNTNYTILSRRSNDGYNWRKYGQKQVRGSQNPRSYYKCTYPNCSTKKKVERSIEGRITEIVYKGNHNHPKPQAGVRRNSSSSSSNSLVIVPVNPNANEIHDHSYGSHGNGQIDSVATPENSSISIGGDDDFEQSSLQRSRSVGPDELVEEEPQPKRWRNEGIVPAHRTVREPRVVVQTTSDIDILDDGYKWRKYGQKVVKGNPNPRSYYKCTHTGCTVRKHVERASHDIKAVITTYEGKHIHDVPAARGSGSNSMNRPTPNNPLNQSNAPFAIRPLQMQLPQGQIRPFHPDLLLGQGNYGVSGFGNQMVPYMNQQQQQQQQQHMSENGFSSLLC 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02958 470 ProSiteProfiles WRKY domain profile. 149 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02958 470 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 3 414 - -
Tsu05g02958 470 MobiDBLite consensus disorder prediction 235 277 - -
Tsu05g02958 470 MobiDBLite consensus disorder prediction 208 228 - -
Tsu05g02958 470 SUPERFAMILY WRKY DNA-binding domain 313 381 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02958 470 Gene3D WRKY domain 308 374 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02958 470 SUPERFAMILY WRKY DNA-binding domain 146 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02958 470 MobiDBLite consensus disorder prediction 71 92 - -
Tsu05g02958 470 MobiDBLite consensus disorder prediction 449 470 - -
Tsu05g02958 470 ProSiteProfiles WRKY domain profile. 316 381 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02958 470 Gene3D WRKY domain 135 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02958 470 SMART WRKY_cls 321 380 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02958 470 SMART WRKY_cls 148 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02958 470 Pfam WRKY DNA -binding domain 149 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02958 470 Pfam WRKY DNA -binding domain 322 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02958 470 MobiDBLite consensus disorder prediction 197 290 - -
Tsu05g02958 470 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 414 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02958 Tsu-Chr5 39859834 39862841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02958 146 414 WRKY Transcription Factor Family AT2G38470 59.567 1.54e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu05g02958 WRKY 8.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02958 K13424 - gmx:100127385 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02958 05 39859834 39862841 Tsu05g02958 05 39859834 39862841 ECH
Tsu03g00818 03 7434547 7439374 Tsu05g02958 05 39859834 39862841 PCT