Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02952 ATGCCCATAAGAATTCCTAATAGACTAATACAGAAAAAGTTATGGAGAATCCTAGGATTTTTTTCAAGCATCATTGGACTCATTTCTTATGCATTAAGCTCTTCTTTCAATCAACTTTTTGGAAATTGGAACTGCATCAAAATCATTATCTACACAGTGATTGATCTTGGTTTTGAATCTGATCTTCTCAATTTCTTCCTTGGAATGCTTACTATTCAATTgatgaaaatcaatttgatgCTATCTATAGTTGCTGCAATTTTCTGTTATTCTCTTATGGTTCTTCGTTCGAAATTAGATACTCGACACGAGATTGGAAATTTAAGAGTGGAAGATGATGTAGCTATAGAAATTGATGATGTAGATAGCCAAGAAAATCAGTCTTTAAGAATAAGAATGAATAATGATGATGGTTATAATTGGAAAAGATATGAAGAAAAATTTGCAAAAGGAAGTGAAAATCAGAAAAGTTACTATAAATGTATGTTGCCTAATTGTGTTGTGAAGAAAAGAGTTGAAagaaatattgatggtgaaaTTATTGAGACATTATATAAAGAAAGAACTGGCTCTATTGATTTTCCAGATCAATCATTTGGCAGTGGACAATTGGATTCTGATGAAGAACTTGGAAAGTCCACAGTATCAATATGA 654 0.2951 MPIRIPNRLIQKKLWRILGFFSSIIGLISYALSSSFNQLFGNWNCIKIIIYTVIDLGFESDLLNFFLGMLTIQLMKINLMLSIVAAIFCYSLMVLRSKLDTRHEIGNLRVEDDVAIEIDDVDSQENQSLRIRMNNDDGYNWKRYEEKFAKGSENQKSYYKCMLPNCVVKKRVERNIDGEIIETLYKERTGSIDFPDQSFGSGQLDSDEELGKSTVSI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02952 217 SMART WRKY_cls 135 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02952 217 SUPERFAMILY WRKY DNA-binding domain 135 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02952 217 Pfam WRKY DNA -binding domain 136 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02952 217 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 3 186 - -
Tsu05g02952 217 Gene3D WRKY domain 121 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02952 217 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 186 IPR044810 GO:0003700
Tsu05g02952 217 MobiDBLite consensus disorder prediction 196 217 - -
Tsu05g02952 217 ProSiteProfiles WRKY domain profile. 135 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02952 Tsu-Chr5 39804751 39805701 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02952 67 186 WRKY Transcription Factor Family AT1G13960 33.871 9.77e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu05g02952 WRKY 1.2e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02952 K13424 - mtr:MTR_5g093540 189.504