Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02949 ATGAATGGAAAACCAGATGCATATAGTCTGATTTCATGTGCTTCATTCGCTCTCATGTCACTCAGTTTATCGAGGCAAATTCAGTGCGGATTTGAAGTGGATCTTATGTCCTTTTATCTAGGATGTTTAATTCTACAACTCATgaagattaattttttgttagcTATTTTTGGAGTTTGTTACAGCTACTGTCTTATTATTATTcgttcttctttttcttccttaAATGTTGAACAAGAAACTGATCAGTGTCTTGGACTCGAAGAACAACAAGTAGTCGTTCAAGTTGATTCAGAACACTTTCATACAAGTTTGGAACTATTGTTGCAACAGTTCTTGACTTGTATGAAAGAGCTTAGCCAGAACAATTCGAATATTGCCAAGATGCTTTTGGAGAAGGTCAAAGGAAACTATAAGTTGGTGGTTACTGATCATAACTTCATACTTGATGCAATTCCGACCGAAACAATCAATAATATTCGTGAAATGGTTAAACTGATGGTGGATGCTGGGTTTGAGAAAGAGTGTTCCGACTTGTACATTTGTTTGCGTAAAGAATGGTTGgaagatttattaaaaaataaattattaggaTTGAGAAAGATGGGATTTCAGGATTACATGATTGGAAGATGGATTAAAGCTTCCAAGGTTGCTCTTAGGATATTGTTTCCCAGTGAGCGTCGCCTCTATGATCGTCTCTTCTCGGAATCCTTTGTATCATCTGATCTTTGTTTTTCTGAGGTTTGTCATGGAGCAACGATTCAACTGTTGAACTTTGCAGATTCGTTTGTGAATCGAAGTCCTTCGGCATGGCGTTTGTTTAAAATCCTTGACTTGTTTGAGACACTCTGTGATCTCATTCCCGAATTTGAAGTGTTGTTTACTGATTCCTTGGTGAATGAAgcaataaaaacaaagaatagATTGGGTGAAGTAAGTAGAACCATTTTCATGGAATTTGGAAAGCTGATCTTTCTTACGCCGGATGCAAAGTTAGATTGTTGGGTTGACGGTGGGATTCATCCAATGACCTGCGAGGCTACAGGCTACATCGTGTTGGCTTTCTGGTCAAGACAGAAACTAGAGCAAGTTTTACGAGAATACTCCACGGTTGCTGCTAATGGAGCGGGAACATCTTTATTCGATTCGCAGATGGAGCTGATAATGGAGAAGTTTGAGAGAAATTTGGAAGCTAAGTCACAAACTTATGAGGACCCCGCTTTGCGGTATTTTTTCATGCTGCATAATATAAGTCTGATTAAGTACAAATTGGAATCCTTTTGGGATGATAGGTTCTGTACAAGGCAATACTTGGAACTCTATTGTAAAAGCTCATGGAGTAAGGTTATAGATATTTTGGAAATGGATATAAATGAATCAACGGCATCCAATTCTGAAGCAGATTCAATGATAGGCAAGCTGAATCTGTTCAATCAGAAGTTTAGGGAGATGTGTGAAATTCAGTCTACATGGCATGTTTTTGATGAACGGCTTaggaaacaaataataatttatgtgGAAAATATGTTGCCGGCTTATGAAAACTTCATTGCAAGGTTTGAGACTGTTCTTGGTATAAATGCCAACAAGTATAGAATGTCTGATATTCGAACTCAACTCAATCATTTGTTTCTGTTACAGGATATTGATGTTGATTCTGTTAGAGGATCTGTTAGGAATCAGTCAGTTAGTTAG 1698 0.3575 MNGKPDAYSLISCASFALMSLSLSRQIQCGFEVDLMSFYLGCLILQLMKINFLLAIFGVCYSYCLIIIRSSFSSLNVEQETDQCLGLEEQQVVVQVDSEHFHTSLELLLQQFLTCMKELSQNNSNIAKMLLEKVKGNYKLVVTDHNFILDAIPTETINNIREMVKLMVDAGFEKECSDLYICLRKEWLEDLLKNKLLGLRKMGFQDYMIGRWIKASKVALRILFPSERRLYDRLFSESFVSSDLCFSEVCHGATIQLLNFADSFVNRSPSAWRLFKILDLFETLCDLIPEFEVLFTDSLVNEAIKTKNRLGEVSRTIFMEFGKLIFLTPDAKLDCWVDGGIHPMTCEATGYIVLAFWSRQKLEQVLREYSTVAANGAGTSLFDSQMELIMEKFERNLEAKSQTYEDPALRYFFMLHNISLIKYKLESFWDDRFCTRQYLELYCKSSWSKVIDILEMDINESTASNSEADSMIGKLNLFNQKFREMCEIQSTWHVFDERLRKQIIIYVENMLPAYENFIARFETVLGINANKYRMSDIRTQLNHLFLLQDIDVDSVRGSVRNQSVS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02949 565 Pfam Exo70 exocyst complex subunit 211 542 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tsu05g02949 565 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 546 IPR004140 GO:0000145|GO:0006887
Tsu05g02949 565 SUPERFAMILY Cullin repeat-like 109 545 IPR016159 -
Tsu05g02949 565 Gene3D Exocyst complex component Exo70 89 549 - -
Tsu05g02949 565 PANTHER PROTEIN, PUTATIVE-RELATED 1 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02949 Tsu-Chr5 39796976 39798673 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02949 142 545 EXO70 exocyst subunit family AT5G58430 43.218 1.35e-97 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02949 - - lja:Lj2g3v2364680.2 528.48