Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02948 ATGAATGGAAAACCAGATGCATATAGTATGATTTCATGTGCTGCCTTTGCTTTGATGTCACTTAGTTTATCGAGGCAAATTCAGTGCGGATTTGAAGTGGATCTGATGTCCTTTTATCTCGGATGTTTAATTCTACAACTCATGAAGATTAACTATTTGTTGGCTATTGTTGGAGTTTGTTATAGCTATTGTCTTATTATTCTTCGTTCGTCTTTCTCTTCGTTAAATGTTACACAAGAAACTCTGTGTCTTAGACCCGAAGAACAGCGTGTAGTCATCCAAATTGATTTACAACAACGAGAAAATACCAATAGTGGTTGCATCCTGCAACACGTTCATTCAAGTTTTGAATCGTTGTTGCAACAGTTTCAAACTTGTATGAAAGAGCTTGAGCGGAACAATTTGAACATTGCGAAGATGCTTATAGAAAAGGTGAAAGGTAACTATAAATTGGTAGTGACTGACCACAACTTCATAACTGATGTGCTACCTCATGAAACAATCAATAATCTTCAAAAATCGGCGAAATTGATGGTGGATGCTGGCTTTGAGAAAGTGTGTTTTGAGGTTTACAACAGTTACCGTAAGGAATGGTTGGAAGACttgttaataaataaattattaagatTAGGAAAGATGGGATTTCATGATTATGTGATTGGAAGATGGATTAAAACTTCAGATATTTCTCTTAGAGTACTATTTCCCAGTGAGCGTCGACTCTACAATTGTGTCTTTTCAGATTCAATGTCTGCATCATCTGATGTCTATTTCTCCGAACTTTGTCGTGGAGCGATAATTGAACTACTGAATTTTGCAGATTCATTTGCAAATCGAAGCCCTTCAGTATGGCGTTTGTTTAAAATCGTCGACTTGTTTGAGACTTTGTGTGATCTAATTCCTGAATTTGAATCATTGTTTCTTGATTCGTTGGTGAATGAAGCAATAAAAATCAAGAATAGATTGGGTGAAATAAGTAGAGACATTTTTATGGACTTTGGGAATCTGATATTCCTTACAAGGGATGCGGAGTTTGATTGTGGGACTGATGGTGGTGTTCATCCAATGATTACCGCAGCTATTGGTTACATCGTTGAGGCTTTCTGGTCAAGACAGAAGCTAGAGCAAATTTTACGACAATATCCCTTGGTTGATGCTGATAGAGCGGGGACATCTACTTTATTCTATTCGCAGATGGAGTTGATCATGGAGCAGTTTGAGAGACAATTGGAAGCTAAGTCACAAATTTATGAAGACTCGGCTTTAAGATATTTCTTCATGATAAATAATCTAAGTCACATGAAGTGCGGATTGGAAACCTTTTGGGATGATAGGTTCTGTAAAAACTCAGGGAAATACTTAAAACTCTATTGCAAAAGCTCTTGGAATATGGTGATAGATATTTTGAAGATGGATATGAATGGGTCGGTGGCGCACAATTCTGAAACCGATTCAATGAAAGGCAAGCTCAATTTATTCAATCACAAGTTTAGGGAGATTTGTGGAATTCAATCTACATGGCGTGTTTATAATGAGCAACTaaggaaacaaataataatttcaattgaAAGCATTTTGTTGCCAACATATGAATACTTCATTGGAATGTTTCGTAATATTGTCGGTACAAATGCAGATGAGTATATCGAGTTTGGAATGTCGAACATTCAAGATCTTCTCAACCATTCGTTTTTATTACAGGATGTTGATTGTATCATAAGATTAGATGAAAatgagttagttagttag 1749 0.3533 MNGKPDAYSMISCAAFALMSLSLSRQIQCGFEVDLMSFYLGCLILQLMKINYLLAIVGVCYSYCLIILRSSFSSLNVTQETLCLRPEEQRVVIQIDLQQRENTNSGCILQHVHSSFESLLQQFQTCMKELERNNLNIAKMLIEKVKGNYKLVVTDHNFITDVLPHETINNLQKSAKLMVDAGFEKVCFEVYNSYRKEWLEDLLINKLLRLGKMGFHDYVIGRWIKTSDISLRVLFPSERRLYNCVFSDSMSASSDVYFSELCRGAIIELLNFADSFANRSPSVWRLFKIVDLFETLCDLIPEFESLFLDSLVNEAIKIKNRLGEISRDIFMDFGNLIFLTRDAEFDCGTDGGVHPMITAAIGYIVEAFWSRQKLEQILRQYPLVDADRAGTSTLFYSQMELIMEQFERQLEAKSQIYEDSALRYFFMINNLSHMKCGLETFWDDRFCKNSGKYLKLYCKSSWNMVIDILKMDMNGSVAHNSETDSMKGKLNLFNHKFREICGIQSTWRVYNEQLRKQIIISIESILLPTYEYFIGMFRNIVGTNADEYIEFGMSNIQDLLNHSFLLQDVDCIIRLDENELVS 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02948 582 PANTHER PROTEIN, PUTATIVE-RELATED 1 565 - -
Tsu05g02948 582 Gene3D Exocyst complex component Exo70 92 568 - -
Tsu05g02948 582 Pfam Exo70 exocyst complex subunit 222 561 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tsu05g02948 582 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 565 IPR004140 GO:0000145|GO:0006887
Tsu05g02948 582 SUPERFAMILY Cullin repeat-like 116 561 IPR016159 -
Tsu05g02948 582 Coils Coil 582 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02948 Tsu-Chr5 39794654 39796402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02948 153 564 EXO70 exocyst subunit family AT5G58430 41.458 1.04e-95 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02948 - - lja:Lj2g3v2364680.2 520.776