Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02946 ATGACATCTATGCTCAACCAAACTTTGAGATGGATTAAGCAGCCAAAGGTATGGAGATTTGTGAGTTTTACATCATCTGTTATCGGACTGTTTTGTTATGGTCTCAGTTCTTCCTTCACCAGTTTATTTGGAAATTGGAATTTGTTGAAGATAATTCTTTACACAATCTATAGTTTCATTATCTCCATTGTCATCTTGTTTGCAAACAAATGGCAAAACTCGAACACTAGTGTTCGACTTAAAGCTCATTTAATATTTTCTGTTTTCACAATCACCAATATATACTCCTTTTTCTTTGACAAGGTTAACGGAAAACCAGATGTGTATAATATGGTTTCTGGTTCTGCTTTTGCTTTCATGTCACTCGGTTTGTCACAGCAGAGCCGCTTTGGTTTCGAGGTtgatcttttatattttttttgcggATATCTAACTGTACAACTCATGAGGATAAAGTTGGTTTTGATCATTGCTGGAGTGAGTTTTAGTTATTCCCTCATTATGCTTCATTTTTATTTGCATTCCCCAATAGGTCAACGCGTCCAACAAGATCAAGATTCCGCAGTCATTATTCAGATCCCTGAAGATAGTTCAGAAGAATTAACCAATACTAGTGCTATTCCAGTGGATGCCTCTCAAGTCAATTCTGACAGTGTTGCCCTATTAGAAAACGTTGATCTTGGACTTCGACAACAAAACGATGGTCTATTAGAACCTAGAGTTGAAGGTGAAAATGAGGGTATAATCCGTAGAAATAGACAAGTGAGAATCCATACAGAAGAACCATTGAGATTCCCTAGTAGAGTTGTTGTTTATCAGACAACAAGTGACATTGATATTCTTGATGATGGTTACAAATGGAGGAAATATGGACAGAAAGTTGTCAAGGGCAATCCAAATAATCCAAGGAGTTACTACAGATGTGAACACCGATTTCGAGAAGGTTGTACTGTGACGAAACAAGTCGAACGTGCCTCACACAATATAAGGGTTGTGATCACAGCTTATAGGGGGGAACACAACCATGATGTTTCCCTGCAGCTCGTGAAAGTGGAAGCAATTCAGTGA 1068 0.3736 MTSMLNQTLRWIKQPKVWRFVSFTSSVIGLFCYGLSSSFTSLFGNWNLLKIILYTIYSFIISIVILFANKWQNSNTSVRLKAHLIFSVFTITNIYSFFFDKVNGKPDVYNMVSGSAFAFMSLGLSQQSRFGFEVDLLYFFCGYLTVQLMRIKLVLIIAGVSFSYSLIMLHFYLHSPIGQRVQQDQDSAVIIQIPEDSSEELTNTSAIPVDASQVNSDSVALLENVDLGLRQQNDGLLEPRVEGENEGIIRRNRQVRIHTEEPLRFPSRVVVYQTTSDIDILDDGYKWRKYGQKVVKGNPNNPRSYYRCEHRFREGCTVTKQVERASHNIRVVITAYRGEHNHDVSLQLVKVEAIQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02946 355 SMART WRKY_cls 281 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02946 355 Gene3D WRKY domain 266 345 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02946 355 PANTHER EXOCYST COMPLEX PROTEIN EXO70 9 211 IPR004140 GO:0000145|GO:0006887
Tsu05g02946 355 SUPERFAMILY WRKY DNA-binding domain 274 344 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02946 355 Pfam WRKY DNA -binding domain 282 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02946 355 PANTHER PROTEIN, PUTATIVE-RELATED 9 211 - -
Tsu05g02946 355 ProSiteProfiles WRKY domain profile. 276 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02946 Tsu-Chr5 39789001 39791350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02946 263 344 WRKY Transcription Factor Family AT5G56270 71.951 1.27e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu05g02946 WRKY 3.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02946 - - mtr:MTR_5g073840 283.108