Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02942 ATGAATTTTGATGCCCAACAAGCAGACATGGATCTTGGACGGGTCACTCACGTCAATTTGTCgtcacaaaaaggaaaaagtgaTAGTGAATACATAAGTCTTGACAATTGTAAAAAAGAGCTAGTTGAAATGAGTCATAAGCTTAATCGCGTTATTTGGCAGCAGCTTGCAAGGATAGAGCCAAAAGTCTTTCCTGACTCCGGTATTTGGGAAATTTTTGACAGGAACACGGAGATGAGTGACATTAAGAACGACCTACACAAAACAGTGAAGAAAATGCTGGAAGCTGGGTTTCAGATTGAGTGTATCAAGGTGTACAACATTTCTCGAAGCAAATTCCTGAACAAGTGCCTGTGTAGACTACAATTGTATGACGTCAACTTGTGGGACGTTGAGAACGTGAATATTGGGAATTTGATAAGTACTTTCCACACAGCTTTAGGAATACTTTTTCCCTATGAGCGTAGGCTTCGGTACCAAGTCTTTGCGGGGCTCAATCTTTACTCTAGAAATTTTACCTCGTTAGATTGGAAGAGTTTTCGCTCACCAGAATGGAAGAGGATCGAAATTGAACTGTGGGTCAAATTTATGGTGTTGCAGTCTCGCATTCACTCCAATTTTCTGCCAGAGACTACTCTTGGTTATGGGATTCATCCTCTTACCAGTGGAGTAATGAATTGCCTTAAACACGTTTCTATAGATATGGATAATAAAGCTTATTCCGACATCCATTTGATCATACAGATGTTAGAGAGTACTTTGGATGCAAAATCCAGAAACTACATAAATCCTGCTTTTGGATATCTTTTCATGCTGAATAATAATAGCTATATACAACACGCGGCACAATATAAACAATTGCAACTCATTTTGGGAAAATATTGGCTTCAAATACAAAATTCTGAAGTTAGACAAAATATTACAGACTATCTAAGATTCACATGGAATAAAGTTTTGAACTTAATGGAGAACAATGAGTCAATGGCTGCTAATGTTGCCGTAGAATCGATGAGATTGTTCTATCTACACTTTTCAGATATATACAGAGTTCAGTTTACATGTTTTAGCGTTGAAAGCAAGCTAAAGGAAAGAATAAGAAGGTCCTTGAAAAAGATGTTGTTGCCACTGTATGAAAAATTCATTGGGAGGTTCAAAGATGTTCTTGGTGAGAATGTTGCTAATCAACATATTAAGTTCGGAATGTCAGACCTTGAAGATCGGCTCGATTGTTTATTTAGTGAACATGAATTGAGGAAGAAGCTGTGTAAGAGAGCTGTGGAAGCGAGTGGATTGAGGAAGCGAGTCGTGAAACCAAGTCGTCGTCCATAG 1329 0.3777 MNFDAQQADMDLGRVTHVNLSSQKGKSDSEYISLDNCKKELVEMSHKLNRVIWQQLARIEPKVFPDSGIWEIFDRNTEMSDIKNDLHKTVKKMLEAGFQIECIKVYNISRSKFLNKCLCRLQLYDVNLWDVENVNIGNLISTFHTALGILFPYERRLRYQVFAGLNLYSRNFTSLDWKSFRSPEWKRIEIELWVKFMVLQSRIHSNFLPETTLGYGIHPLTSGVMNCLKHVSIDMDNKAYSDIHLIIQMLESTLDAKSRNYINPAFGYLFMLNNNSYIQHAAQYKQLQLILGKYWLQIQNSEVRQNITDYLRFTWNKVLNLMENNESMAANVAVESMRLFYLHFSDIYRVQFTCFSVESKLKERIRRSLKKMLLPLYEKFIGRFKDVLGENVANQHIKFGMSDLEDRLDCLFSEHELRKKLCKRAVEASGLRKRVVKPSRRP 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02942 442 PANTHER PROTEIN, PUTATIVE-RELATED 74 413 - -
Tsu05g02942 442 Pfam Exo70 exocyst complex subunit 245 409 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tsu05g02942 442 Gene3D Exocyst complex component Exo70 11 175 - -
Tsu05g02942 442 Gene3D Exocyst complex component Exo70 185 420 - -
Tsu05g02942 442 PANTHER EXOCYST COMPLEX PROTEIN EXO70 74 413 IPR004140 GO:0000145|GO:0006887
Tsu05g02942 442 SUPERFAMILY Cullin repeat-like 80 412 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02942 Tsu-Chr5 39776384 39777712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02942 84 412 EXO70 exocyst subunit family AT5G58430 29.540 1.52e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02942 K07195 - cam:101511504 382.874