Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02940 ATGTCCATATTCATCCAATTTCGGTGGTGGTTGATTCAGCCAAAGTTGTGGAGATTTGTAGGCTTTGCTTCAGCTGTGGTTGGACTGCTCTGTTATGCTCTTAGTTCTTCCTTCAACTATCTATTTGGAGATTggaatttgttgaaaatatttctttatagtGTTTTCAGTTTCATCATCTGCATGGtgattttattttcaaagataTTGCAACATTCTAGAAGTCTCCAATTCAAAGCTCATTCGGCATTTTTTGTATTGACAATCACCGcagtttattcttttttctttgataaagtGGTGAATGGCAAACCAGATGCATATAGTCTACTTTCATGTGCTGCTTTTTCTATCATGTCACTTAGTTTGTCGAGGCAAACTGAGTGCGGATTTGAAGTCGATCTTCTTTACTTTTTTCTTGGATGTCTAATTGTACAACTCATGAAGATTAAATTGCAACTATTCTTTCTTGGAGCAGGTTTTAGCTATTGCCTCATTATTATTCgttcttccttttcttcaaTAGATGTCATAGGAGATAATCAGTACTCTCAACTCCAAGATGGAAATTCCGTGATTCTATACATGGATTCTCTACAACTCGATAATACTCATGTTGCTAGTGCTAGCAATAGCATTGATTCACCACAATTGGTGATCAGTACCGATATTAGTAGTATGATGGAAAAACTCAGGACATGTGTGAAGGCGCTTCAACACCAAAATTCAAATCTCATTCAAATGTTGTTAGCGCATGTGAAAAAATACGTTGAAGAACACTCTCAGTTGGTGGAGACCGACCCTAACTTCATGATAGATGCGCTGAAGCCAGAAACAATTAAAGAACTTGAGGAAACAGCAAAGGTTATGGTGAGCAATGGGTTTGAGAAGGATTTTTCTGATGTGTACAACAATTGTCGTAGGGAATGCTTAAACGAGTGCATAAAGCATAGATTATTCGGGTTACAGAAGCTCAACATCGATGATGTTCATAATATGCCATGGAAGGATCTTGAAAGCGAGATTGAAAGGTGGATTAAAGCTTTTAATGTCGCTCTCAAGATACTCTTCCCTGGCGAGAAACGACTCTGCGATAGCATCTTCTTTGGATTCTCATCTATAGCTGATTTCTCCTTCATGGAGATTTGCAAGGAATCCACAGCTGAGCTTCTGAATTTCGCTGATTCTGTCGCCACCGGAAACCATTCACCGAAGCATTTGTTTAAAATGCTCGAGGTGTTTGAAACATTGCGTGACCTAATTCCAGAATTTGAGATCTTATTTTGTGATCAATATAGTGTGTCTCTAAGGAATGAAGCAATTACAATTTGGAAGAGGTTGGGGGAAGCAATCATAGGCATTTTCTTTGAGCTGGAGGATCTGATTAATGATTCCTCACTTAATCTGTATGATGGTAGGATTATAGACACATTGGAGTTTGATTTGAATGCGATGTCCGGATTCTACGGAGGATCTTCTTACGGCTATGTTTTTTTGATGAATAATGACATATACATAGTTCGAATGACCAAAAATAATGAACTAGGAACCCTTTTGAGTAATGATTGGATCCGAAAACAAGCTCTAAAAATTTGGCACTATAACGGGGAATATACAAAATCCATAGGTAATTTGACCCGGCCTTTAGAGCAGGATTTATTTCGGTTGAAAAGATATGGCGGGGATGTTCAGCAGCTATTGTACAACACCCAACAGATCGGTGAAATAGATGAGGGGAATTTAGAAGGTTTTGAAGGATCAAAGGGGTATAAGGGAGATGTGCAGGAAATAGAAGAATCATCACCCTCGCAGCCACAGAAAAGGAAAAAGGATCCGGTGATGAAAACAATAGTGATCTCTCTCGCACCACAATTTGAGAATGCATATAAAATTCTACCACCGGAAGACGGGTTTACCTGGAGAAAATATAGCAAAAATGAGATACTTGGCTTCAAATACCCTAGgagTTACTACAAGTGCAGCTATGCGAAATTACATGCGTGCCGAGCCAAGAAGGAAGTACAGCAACTTGGTAACAATCCAAACGTGTTTGAAGTAAGATACCATGGTGGACATTCCTGCGGCATGTCCTTAAAAACGCCAGCACGGCAACTAGCGAATACCACAATGGATATGATTCAAACCAATATGCCTCCATTGTCAACTTCATATTCTCGGTGGATTTCACCGATCATACCAGCCCAATCTATAAACAATATCCCAGAGGCCAAGCTACCTGCTCCAGCCGACGGAAGGCATCATACTATGATGGACAATGTCGCCAGCTATTTTGATTCTGCTATAAGATCACAGCAGATCAGGGTTGCTAATGGAGTTGGAGAATTTTCATATTCAGCAGAAATGGACCTGTTGGAGAGCATATTGGCATCCAAATCCTTAAAATATGTAGACACTTCTTTGCGGCATTTTTTCATGATGAATAATTGGAGGTATTTAGAAGTgacaaataaaattatgaaactgGAACCAATTTCTGGCGATGCTTGGTTGCAAAGAAACAGAGCAAAAGTCCAACAAAATCTTGAACTCTATCAAAGGGAGTCATGGGATAAGGTGTTTGAATTTTTAAAGTTGGATATTATGAATGACTCCATGGAAATTAATTGTGCAATAGATTTGATGAAAGAAAAGCTCAGTTTGTTTAACATGAACTTTACAGAGACATGTAGAATTCAGTGCACATGGTCTGTTCATGATGAGAAGCTAAGGAAAGAAATAATTGGATCTCTGAAAAACACCTTGTTGCCAGCATATGGAATCTTCATCGGAAAGTTTCAAGATTTTCTTAAAGACAATGCTTACGAGTATATTGAGTATGGAATGTTTGACATTCATGATATACTTGATAATTTGTTTCTTGGAAACAAGAAATACAGATGA 2901 0.3737 MSIFIQFRWWLIQPKLWRFVGFASAVVGLLCYALSSSFNYLFGDWNLLKIFLYSVFSFIICMVILFSKILQHSRSLQFKAHSAFFVLTITAVYSFFFDKVVNGKPDAYSLLSCAAFSIMSLSLSRQTECGFEVDLLYFFLGCLIVQLMKIKLQLFFLGAGFSYCLIIIRSSFSSIDVIGDNQYSQLQDGNSVILYMDSLQLDNTHVASASNSIDSPQLVISTDISSMMEKLRTCVKALQHQNSNLIQMLLAHVKKYVEEHSQLVETDPNFMIDALKPETIKELEETAKVMVSNGFEKDFSDVYNNCRRECLNECIKHRLFGLQKLNIDDVHNMPWKDLESEIERWIKAFNVALKILFPGEKRLCDSIFFGFSSIADFSFMEICKESTAELLNFADSVATGNHSPKHLFKMLEVFETLRDLIPEFEILFCDQYSVSLRNEAITIWKRLGEAIIGIFFELEDLINDSSLNLYDGRIIDTLEFDLNAMSGFYGGSSYGYVFLMNNDIYIVRMTKNNELGTLLSNDWIRKQALKIWHYNGEYTKSIGNLTRPLEQDLFRLKRYGGDVQQLLYNTQQIGEIDEGNLEGFEGSKGYKGDVQEIEESSPSQPQKRKKDPVMKTIVISLAPQFENAYKILPPEDGFTWRKYSKNEILGFKYPRSYYKCSYAKLHACRAKKEVQQLGNNPNVFEVRYHGGHSCGMSLKTPARQLANTTMDMIQTNMPPLSTSYSRWISPIIPAQSINNIPEAKLPAPADGRHHTMMDNVASYFDSAIRSQQIRVANGVGEFSYSAEMDLLESILASKSLKYVDTSLRHFFMMNNWRYLEVTNKIMKLEPISGDAWLQRNRAKVQQNLELYQRESWDKVFEFLKLDIMNDSMEINCAIDLMKEKLSLFNMNFTETCRIQCTWSVHDEKLRKEIIGSLKNTLLPAYGIFIGKFQDFLKDNAYEYIEYGMFDIHDILDNLFLGNKKYR 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02940 966 PANTHER EXOCYST COMPLEX PROTEIN EXO70 472 541 IPR004140 GO:0000145|GO:0006887
Tsu05g02940 966 Gene3D Exocyst complex component Exo70 468 564 - -
Tsu05g02940 966 SUPERFAMILY Cullin repeat-like 788 959 IPR016159 -
Tsu05g02940 966 Pfam Exo70 exocyst complex subunit 788 956 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tsu05g02940 966 Pfam Exo70 exocyst complex subunit 343 464 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tsu05g02940 966 Pfam Exo70 exocyst complex subunit 465 551 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tsu05g02940 966 Gene3D WRKY domain 621 696 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02940 966 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 472 541 - -
Tsu05g02940 966 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 20 464 - -
Tsu05g02940 966 ProSiteProfiles WRKY domain profile. 635 697 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02940 966 SUPERFAMILY WRKY DNA-binding domain 629 696 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g02940 966 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 737 959 - -
Tsu05g02940 966 Pfam WRKY DNA -binding domain 635 694 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02940 966 PANTHER EXOCYST COMPLEX PROTEIN EXO70 737 959 IPR004140 GO:0000145|GO:0006887
Tsu05g02940 966 SMART WRKY_cls 634 696 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g02940 966 Gene3D Exocyst complex component Exo70 221 467 - -
Tsu05g02940 966 Gene3D Exocyst complex component Exo70 734 966 - -
Tsu05g02940 966 PANTHER EXOCYST COMPLEX PROTEIN EXO70 20 464 IPR004140 GO:0000145|GO:0006887
Tsu05g02940 966 SUPERFAMILY Cullin repeat-like 206 539 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02940 Tsu-Chr5 39759205 39763667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02940 743 966 EXO70 exocyst subunit family AT5G58430 38.655 4.90e-33 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu05g02940 Exo70 3e-37 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02940 - - cam:101500706 1135.55