Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02938 ATGGAATTTGGGAATATGATGTTCCTTACACCGGATGCGGAGTTTGATTGTTGGGTTGATGGTGGTGTTCATCCAATGACTTGTGCAGCCACTGACTACATTCTTATGGCTTTCTTGTCAAGAAAGAACTTGGAGCAAATTTTAAGAGAACATCCCTTGGTTGTTTCTGATGGAGCGGGAACATCTTTATTCTATTCGCAAATGGAGTTGATAATGGAGCAATTTGAGAGAAAACTGGAAGCTAGGTCACAAATTTATGAAAACCCTGCTTTGCATTATTTTTTCATGACCAATAATCTATGTCATGTTAAGTGCAAATTGGAATCCTTTTGGGATGACAGGTCTCTCTCAATCTCCTTATTGGCTGGATTTTCCAAGTTATCAGGATTCAGCTGCGTGCTTATTATTCTTCATTCATCCTTTCCTTCCTTAGACGTAGCAGGAGATAATGAATTCCTTGGAATCGAAGATGAAAATTTCGTAGTTATAGAAGTCCGTTCACATTCACCACAACTGGATAGTAATAATTTTGGTAGTATGGTGGAGCAACTCAGTACTTGTCTGAAGGCACTTCAGCTAGAAAATTTCAATCTCATCGAAATGCTTTTGGAGAAGTTAAAAGAATACCGTAGTGATTATTCTGAATTGATTGTATCTGAACCTGATTTCATGATCAATGCCTTGCCACCTGAAATCATTGACAACCTTAAAAAAATAGCGAAGTTGATGGTTAGCACCGGGTTTGAAAGGGATTTCTGTGACATGTATAGCCGTTTCCGGAGGAAATGTTTGGTTGAAAGCCTCTCGAGGTTATGGTTCCAGAAACTCAGCATTGAAGGCCTTCAGATGTTGTCATGGAAGGAAATGGAAGACGATATTAAAAGATGGATTAAAGCTTCAAAAGTGGCATTGAAGATATTGTTGCCCACTGAACGGCGACTCTGCGATCAGGTTTTCTTTGGATTCTCCGCCATCGCTGATTTATCCTTCACGGATGTTTGCATGGAATCCACACTTGAGCTGCTGAGTTTCACCAAAGCTATGGCCATCGTAAGACGATCACCTGAACCTGAACGGTTGTTTAGAATCCTTTGA 1095 0.4009 MEFGNMMFLTPDAEFDCWVDGGVHPMTCAATDYILMAFLSRKNLEQILREHPLVVSDGAGTSLFYSQMELIMEQFERKLEARSQIYENPALHYFFMTNNLCHVKCKLESFWDDRSLSISLLAGFSKLSGFSCVLIILHSSFPSLDVAGDNEFLGIEDENFVVIEVRSHSPQLDSNNFGSMVEQLSTCLKALQLENFNLIEMLLEKLKEYRSDYSELIVSEPDFMINALPPEIIDNLKKIAKLMVSTGFERDFCDMYSRFRRKCLVESLSRLWFQKLSIEGLQMLSWKEMEDDIKRWIKASKVALKILLPTERRLCDQVFFGFSAIADLSFTDVCMESTLELLSFTKAMAIVRRSPEPERLFRIL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02938 364 Pfam Exo70 exocyst complex subunit 19 108 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tsu05g02938 364 Pfam Exo70 exocyst complex subunit 294 364 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tsu05g02938 364 PANTHER EXOCYST COMPLEX PROTEIN EXO70 19 106 IPR004140 GO:0000145|GO:0006887
Tsu05g02938 364 PANTHER EXOCYST COMPLEX PROTEIN EXO70 160 364 IPR004140 GO:0000145|GO:0006887
Tsu05g02938 364 SUPERFAMILY Cullin repeat-like 168 364 IPR016159 -
Tsu05g02938 364 SUPERFAMILY Cullin repeat-like 18 109 IPR016159 -
Tsu05g02938 364 Gene3D Exocyst complex component Exo70 2 117 - -
Tsu05g02938 364 Gene3D Exocyst complex component Exo70 162 364 - -
Tsu05g02938 364 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 160 364 - -
Tsu05g02938 364 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 19 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02938 Tsu-Chr5 39754159 39756300 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02938 211 364 EXO70 exocyst subunit family AT5G58430 51.899 1.04e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02938 K07195 - cam:101500706 221.09